RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 COPZ2Q9P299 210 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ZNF629Q9UEG4 869 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 TP53TG5Q9Y2B4 290 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ZNF816-ZNF321PA0A0X1KG74 233 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 SMIM30A4D0T7 59 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 NAP1L6A6NFF2 107 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 GABARAPH6UMI1 98 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 DVL2O14641 736 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 TPD52L2O43399 206 aaKnown RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 PAHP00439 452 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 IGHV3-9P01782 118 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 PDGFAP04085 211 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 HCKP08631 526 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 CEACAM8P31997 349 aaPredicted RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 FAUP35544 74 aaKnown RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 FUT6P51993 359 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 CXADRP78310 365 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 DYRK1AQ13627 763 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OR8B8Q15620 311 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 TAB1Q15750 504 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 ZNF79Q15937 498 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 C2orf76Q3KRA6 126 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OTPQ5XKR4 325 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 DCDC5Q6ZRR9 648 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 LHFPL2Q6ZUX7 228 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 BTLAQ7Z6A9 289 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 LSRQ86X29 649 aaPredicted RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 CENPSQ8N2Z9 138 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 C9orf106Q8NAJ2 232 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 STEAP2Q8NFT2 490 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OR4M1Q8NGD0 313 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OR5M9Q8NGP3 310 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OR10AC1Q8NH08 325 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 AKR7LQ8NHP1 331 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 KCNG3Q8TAE7 436 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 SYNPRQ8TBG9 265 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 LGALS14Q8TCE9 139 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 EXTL1Q92935 676 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 PPP1R14AQ96A00 147 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 MRPS24Q96EL2 167 aaKnown RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 HIST1H2AAQ96QV6 131 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 GPER1Q99527 375 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 THAP7Q9BT49 309 aaPredicted RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 SCPEP1Q9HB40 452 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 RHOFQ9HBH0 211 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 B3GNT2Q9NY97 397 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 ELOVL5Q9NYP7 299 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 OR5V1Q9UGF6 321 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 KCNN3Q9UGI6 736 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 PRSS50Q9UI38 385 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 ZNF107Q9UII5 783 aaPredicted RBP6.93□□□□□ -1.3
VPS39-213ENST00000570062 SPEF1Q9Y4P9 236 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 N6AMT1Q9Y5N5 214 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 PCNX3Q9H6A9 2034 aa6.93□□□□□ -1.3
VPS39-213ENST00000570062 A0A096LPE4 126 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 A0A1W2PPZ6 126 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 C5orf49A4QMS7 147 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 GGT3PA6NGU5 568 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 CST4P01036 141 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 HLA-HP01893 362 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 EIF4EP06730 217 aaKnown RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 ITGA5P08648 1049 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 CSF3P09919 207 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 SLC2A1P11166 492 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 RAD52P43351 418 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 POU3F4P49335 361 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 RBP2P50120 134 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 ATP1B3P54709 279 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 SPOCK1Q08629 439 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 PPA1Q15181 289 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 GABRA6Q16445 453 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 TIMM23BQ5SRD1 257 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 SFRP5Q5T4F7 317 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 GFRALQ6UXV0 394 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 MRPL21Q7Z2W9 205 aaKnown RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 LYPD6Q86Y78 171 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 DMRTC2Q8IXT2 367 aaPredicted RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 CMTM4Q8IZR5 234 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 GABRG1Q8N1C3 465 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 TOMM5Q8N4H5 51 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 ZSCAN4Q8NAM6 433 aaPredicted RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 CPEB3Q8NE35 698 aaKnown RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 SLC30A7Q8NEW0 376 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 OR13C9Q8NGT0 318 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 FAM46BQ96A09 425 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 SLC25A28Q96A46 364 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 STARD4Q96DR4 205 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 ADAT3Q96EY9 351 aaPredicted RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 ZC3HAV1LQ96H79 300 aaKnown RBP6.92□□□□□ -1.3
VPS39-213ENST00000570062 POM121L2Q96KW2 1035 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 GFI1Q99684 422 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 SLX1AQ9BQ83 275 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 BCL2L14Q9BZR8 327 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 ACTR6Q9GZN1 396 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 CDH20Q9HBT6 801 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 PIGLQ9Y2B2 252 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 ZNF835Q9Y2P0 537 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 RAXQ9Y2V3 346 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 MPC1Q9Y5U8 109 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 TENM4Q6N022 2769 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms