RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 FZD2Q14332 565 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 EIF2S3LQ2VIR3 472 aaKnown RBP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 C6orf201Q7Z4U5 140 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR5T1Q8NG75 326 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR52N5Q8NH56 324 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 FLVCR1-AS1Q8TAF5 88 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 FAM213BQ8TBF2 198 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 C15orf40Q8WUR7 153 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF426Q9BUY5 554 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZFP57Q9NU63 452 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 MIOXQ9UGB7 285 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 SIT1Q9Y3P8 196 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 TRBV5-5A0A0J9YX44 114 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 RNASEK-C17orf49H0YIS7 233 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 FBP1P09467 338 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 RBMXP38159 391 aaKnown RBP13.02□□□□□ -0.32
HOXC11-202ENST00000546378 CAMLGP49069 296 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 ANKRD55Q3KP44 614 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 C9orf135Q5VTT2 229 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 MOB3CQ70IA8 216 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 UBALD1Q8TB05 177 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 CTHRC1Q96CG8 243 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 PIK3IP1Q96FE7 263 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 COPS7AQ9UBW8 275 aa13.02□□□□□ -0.32
HOXC11-202ENST00000546378 RAB27BO00194 218 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 SMIM10L1P0DMW3 83 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 CD38P28907 300 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 RORAP35398 523 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 DMWDQ09019 674 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 LILRB1Q8NHL6 650 aaPredicted RBP13.02□□□□□ -0.33
HOXC11-202ENST00000546378 SLAMF6Q96DU3 332 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF764Q96H86 408 aaPredicted RBP13.02□□□□□ -0.33
HOXC11-202ENST00000546378 SMIM10Q96HG1 83 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 LCORQ96JN0 433 aaPredicted RBP13.02□□□□□ -0.33
HOXC11-202ENST00000546378 UQCC2Q9BRT2 126 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 LMF2Q9BU23 707 aaKnown RBP13.02□□□□□ -0.33
HOXC11-202ENST00000546378 TMEM59Q9BXS4 323 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 TGIF2Q9GZN2 237 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 ZFHX4Q86UP3 3567 aa13.02□□□□□ -0.33
HOXC11-202ENST00000546378 SPTY2D1-AS1A0A0U1RR47 76 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 CDRT15L2A8MXV6 281 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 IGHV3-9P01782 118 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 FAHP16930 419 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 CXCL12P48061 93 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 CLRN1P58418 232 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 TAF9Q16594 264 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 HAGHQ16775 308 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 PABPC1L2AQ5JQF8 200 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 SPIN3Q5JUX0 258 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 PGAP1Q75T13 922 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 C1QL2Q7Z5L3 287 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 MCHR2Q969V1 340 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 S100PBPQ96BU1 408 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 RHOVQ96L33 236 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 CDC6Q99741 560 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 WIPF3A6NGB9 483 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 H3BP45 60 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 EFSO43281 561 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 SPRY1O43609 319 aaPredicted RBP13.01□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF217O75362 1048 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 ACAA1P09110 424 aaPredicted RBP13.01□□□□□ -0.33
HOXC11-202ENST00000546378 ASAH2BP0C7U1 165 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 TMEM225BP0DP42 221 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 NDUFA6P56556 154 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 YPEL5P62699 121 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 RIPPLY1Q0D2K3 151 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 EID2Q8N6I1 236 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 C11orf40Q8WZ69 217 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 TMEM265A0A087WTH1 108 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 K7EPK0 472 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 ZBTB25P24278 435 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 OR1D5P58170 312 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 GGTLC2Q14390 218 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 MIDNQ504T8 468 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 OGFOD3Q6PK18 319 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 FAM71E2Q8N5Q1 922 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 OR2AE1Q8NHA4 323 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 RNF128Q8TEB7 428 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 OR51B6Q9H340 312 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 PRO1933Q9H354 126 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 PRR14LQ5THK1 2151 aa13.01□□□□□ -0.33
HOXC11-202ENST00000546378 EP300Q09472 2414 aaPredicted RBP13.01□□□□□ -0.33
HOXC11-202ENST00000546378 LPAL2Q16609 132 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF684Q5T5D7 378 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 TMEM182Q6ZP80 229 aaPredicted RBP13□□□□□ -0.33
HOXC11-202ENST00000546378 PTPMT1Q8WUK0 201 aaPredicted RBP13□□□□□ -0.33
HOXC11-202ENST00000546378 FSCN3Q9NQT6 498 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 HS3ST3A1Q9Y663 406 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 RHPN2P1A8MT19 583 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 RAD51DO75771 328 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 WDPCPO95876 746 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 DBHP09172 617 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 TUBG1P23258 451 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 FCGR2CP31995 323 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 DHRS11Q6UWP2 260 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF595Q8IYB9 648 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 ZNF565Q8N9K5 539 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 TMEM229BQ8NBD8 167 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 OR1M1Q8NGA1 313 aa13□□□□□ -0.33
HOXC11-202ENST00000546378 MAFAQ8NHW3 353 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms