RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CDC14BO60729 498 aa14.85□□□□□ -0.03
USP28-208ENST00000540438 GLRA1P23415 457 aa14.85□□□□□ -0.03
USP28-208ENST00000540438 C5orf46Q6UWT4 87 aa14.85□□□□□ -0.03
USP28-208ENST00000540438 ZNF471Q9BX82 626 aaPredicted RBP14.85□□□□□ -0.03
USP28-208ENST00000540438 PRO3102Q9H379 93 aa14.85□□□□□ -0.03
USP28-208ENST00000540438 TOX3O15405 576 aaPredicted RBP14.84□□□□□ -0.03
USP28-208ENST00000540438 LIFP15018 202 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 NAGAP17050 411 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 RBMXP38159 391 aaKnown RBP14.84□□□□□ -0.03
USP28-208ENST00000540438 RGS19P49795 217 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 QRFPP83859 136 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 TAF9Q16594 264 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 LINC00696Q6ZRV3 163 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 OR9K2Q8NGE7 335 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 C15orf40Q8WUR7 153 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 ARRDC1-AS1Q9H2J1 176 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 ROS1P08922 2347 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 PCNX2A6NKB5 2137 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 TMEM225BP0DP42 221 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 ACKR3P25106 362 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 FOLR3P41439 243 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 SUMO3P55854 103 aaPredicted RBP14.84□□□□□ -0.03
USP28-208ENST00000540438 ENDOGQ14249 297 aaKnown RBP14.84□□□□□ -0.03
USP28-208ENST00000540438 CLEC9AQ6UXN8 241 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 FAM166BA8MTA8 275 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 DISC1C4P0D8 188 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 TSPAN4O14817 238 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 DKK1O94907 266 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 LCATP04180 440 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 NMBP08949 121 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 CD63P08962 238 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 SLC35A1P78382 337 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 FBXW5Q969U6 566 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 SDHAF2Q9NX18 166 aa14.84□□□□□ -0.03
USP28-208ENST00000540438 A0A1W2PNV4 684 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 HOXB5P09067 269 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 PGAM2P15259 253 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 MSX1P28360 303 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 FOXG1P55316 489 aaPredicted RBP14.83□□□□□ -0.04
USP28-208ENST00000540438 ZNF660Q6AZW8 331 aaPredicted RBP14.83□□□□□ -0.04
USP28-208ENST00000540438 ZIC4Q8N9L1 334 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 PNLDC1Q8NA58 520 aaKnown RBP14.83□□□□□ -0.04
USP28-208ENST00000540438 NARS2Q96I59 477 aaKnown RBP14.83□□□□□ -0.04
USP28-208ENST00000540438 C1orf147Q96MC9 270 aaPredicted RBP14.83□□□□□ -0.04
USP28-208ENST00000540438 CACNA1DQ01668 2161 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 DHHO43323 396 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 MSR1P21757 451 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 BTN1A1Q13410 526 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 TUSC1Q2TAM9 212 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 TMEM65Q6PI78 240 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 OPN5Q6U736 354 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 FADS6Q8N9I5 356 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 OIT3Q8WWZ8 545 aa14.83□□□□□ -0.04
USP28-208ENST00000540438 LINC00862A6NCI5 91 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 M0R135 149 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 TLX3O43711 291 aaPredicted RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 AMY2BP19961 511 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 CSNK2A1P68400 391 aaPredicted RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 NHLRC3Q5JS37 347 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 NKAIN3Q8N8D7 197 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 CSNK2A3Q8NEV1 391 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 OR2Y1Q8NGV0 311 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 ZNF799Q96GE5 643 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 GPHA2Q96T91 129 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 VRK1Q99986 396 aaPredicted RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 MBD2Q9UBB5 411 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 ESPL1Q14674 2120 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 C9orf170A2RU37 121 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 HSPB2A8KAH6 182 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 HSPB6O14558 160 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 FGF5P12034 268 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 MGMTP16455 207 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 GDF1P27539 372 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 SERPINF1P36955 418 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 HSPB2Q16082 182 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 CLLU1Q5K131 121 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 DEGS2Q6QHC5 323 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 RBPMSQ93062 196 aaKnown RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 MED30Q96HR3 178 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 OR2S2Q9NQN1 319 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 GPR160Q9UJ42 338 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 KIAA2026Q5HYC2 2103 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 SLC33A1O00400 549 aaPredicted RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 PMS2P2O95744 297 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 HOXD11P31277 338 aaPredicted RBP14.82□□□□□ -0.04
USP28-208ENST00000540438 ATP1A1-AS1Q5TC04 95 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 S100A13Q99584 98 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 FAAP24Q9BTP7 215 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 SPEF1Q9Y4P9 236 aa14.82□□□□□ -0.04
USP28-208ENST00000540438 COL5A1P20908 1838 aaPredicted RBP14.81□□□□□ -0.04
USP28-208ENST00000540438 LOC390937A0A1W2PQ73 354 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 RRASP10301 218 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 CASRP41180 1078 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 CARD18P57730 90 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 GTPBP8Q8N3Z3 284 aaPredicted RBP14.81□□□□□ -0.04
USP28-208ENST00000540438 GALNT11Q8NCW6 608 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 OR14K1Q8NGZ2 314 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 CCDC107Q8WV48 283 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 EHFQ9NZC4 300 aa14.81□□□□□ -0.04
USP28-208ENST00000540438 UPB1Q9UBR1 384 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms