RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ETFRF1Q6IPR1 90 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MYO7BQ6PIF6 2116 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GALNT16Q8N428 558 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DMRT1Q9Y5R6 373 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 K7EPK0 472 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TGOLN2O43493 480 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 NME2P1O60361 137 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SCAF4O95104 1147 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RAB4AP20338 218 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ACAA2P42765 397 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC6A8P48029 635 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF84P51523 738 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 POLR2HP52434 150 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DNM1P34Q6PK57 102 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC22A25Q6T423 547 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DPY19L2P2Q6ZN68 376 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FAM71E2Q8N5Q1 922 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR11G2Q8NGC1 345 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 UBL7Q96S82 380 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SPOCK3Q9BQ16 436 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 JAM3Q9BX67 310 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 EXOSC3Q9NQT5 275 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KCNK7Q9Y2U2 307 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LOXL2Q9Y4K0 774 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C2orf16Q68DN1 1984 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TRAV36DV7A0A075B6V5 113 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RAB5AP20339 215 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ATP1B3P54709 279 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RSPO4Q2I0M5 234 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ACER2Q5QJU3 275 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 EXOSC6Q5RKV6 272 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 UBALD2Q8IYN6 164 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FAM213BQ8TBF2 198 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 THOC3Q96J01 351 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SELENOIQ9C0D9 397 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MMP25Q9NPA2 562 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TREM2Q9NZC2 230 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ETV7Q9Y603 341 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TICRRQ7Z2Z1 1910 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A8MVM7 634 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 STK17BO94768 372 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR2T7P0C7T2 308 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PATE4P0C8F1 98 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GALP22466 123 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CASRP41180 1078 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TAS2R31P59538 309 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZP1P60852 638 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC36A2Q495M3 483 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 AWAT2Q6E213 333 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GABRG1Q8N1C3 465 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR2T27Q8NH04 317 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PGAM5Q96HS1 289 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RTN4RQ9BZR6 473 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DUSP15Q9H1R2 295 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LRFN1Q9P244 771 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SYT7O43581 403 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CRTAPO75718 401 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 AVPR2P30518 371 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 F2RL1P55085 397 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF74Q16587 644 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CCNL2Q96S94 520 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CACNA1AO00555 2505 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 IGF2RP11717 2491 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LRP3O75074 770 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FBP1P09467 338 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SMIM10L1P0DMW3 83 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FGF7P21781 194 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GUCA2AQ02747 115 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 Q499Y3 187 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC22A6Q4U2R8 563 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR10AC1Q8NH08 325 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF501Q96CX3 271 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SMIM10Q96HG1 83 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FKRPQ9H9S5 495 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FER1L5A0AVI2 2057 aa9.61□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SPG11Q96JI7 2443 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PCDH15Q96QU1 1955 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF354AO60765 605 aaPredicted RBP9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 AMY2BP19961 511 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MGAT2Q10469 447 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MPPED2Q15777 294 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF239Q16600 458 aaKnown RBP9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DCAF12L2Q5VW00 463 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FAM57BQ71RH2 274 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF610Q8N9Z0 462 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR56B1Q8NGI3 324 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SECTM1Q8WVN6 248 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PHYHIPQ92561 330 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RAB39BQ96DA2 213 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SPSB2Q99619 263 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A087WV48 116 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TRAV1-2A0A0B4J238 106 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C7orf77A4D0Y5 90 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SSR4P51571 173 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TGIF1Q15583 401 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 AWAT1Q58HT5 328 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GRINAQ7Z429 371 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HSD17B11Q8NBQ5 300 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 BHLHE23Q8NDY6 225 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms