RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GMDSO60547 372 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 LMX1BO60663 402 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 LILRA1O75019 489 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 OCM2P0CE71 109 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 CA6P23280 308 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 PSMA1P25786 263 aaKnown RBP13.46□□□□□ -0.25
USP40-206ENST00000443711 GABRA5P31644 462 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 PPOXP50336 477 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 KRTAP10-9P60411 292 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 RPS11P62280 158 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP40-206ENST00000443711 SSX1Q16384 188 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 Q499Y3 187 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 Q6ZR03 302 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 OR13C5Q8NGS8 318 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 PIGCQ92535 297 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 THRSPQ92748 146 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 DIRC2Q96SL1 478 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 PAPOLGQ9BWT3 736 aaKnown RBP13.46□□□□□ -0.25
USP40-206ENST00000443711 MSL2Q9HCI7 577 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 ABCB9Q9NP78 766 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 NDUFB11Q9NX14 153 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 SCOCQ9UIL1 159 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 SF3B6Q9Y3B4 125 aaKnown RBP13.46□□□□□ -0.25
USP40-206ENST00000443711 RHBDD3Q9Y3P4 386 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 MPC1Q9Y5U8 109 aa13.46□□□□□ -0.25
USP40-206ENST00000443711 CACNA1DQ01668 2161 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 C17orf100A8MU93 164 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 NAT2P11245 290 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 SOX2P48431 317 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 RPS25P62851 125 aaKnown RBP13.45□□□□□ -0.26
USP40-206ENST00000443711 PRDX4Q13162 271 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 OR8G1Q15617 311 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 ACSM3Q53FZ2 586 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 CLVS2Q5SYC1 327 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 PP6455Q8WZ26 134 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 TMEM203Q969S6 136 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 HIST1H2AAQ96QV6 131 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 CCL19Q99731 98 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 VRK1Q99986 396 aaPredicted RBP13.45□□□□□ -0.26
USP40-206ENST00000443711 SPG11Q96JI7 2443 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 LRBAP50851 2863 aa13.45□□□□□ -0.26
USP40-206ENST00000443711 CELSR2Q9HCU4 2923 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 A0A1B0GWJ7 208 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 A6NIN4 97 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 ZSCAN5BA6NJL1 495 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 ZNF850A8MQ14 1090 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 ZNF879B4DU55 563 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 SPRY3O43610 288 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 GATBO75879 557 aaKnown RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 NRASP01111 189 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 HLA-DPB1P04440 258 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 ADH4P08319 380 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 TNFSF4P23510 183 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 MAPK3P27361 379 aaPredicted RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 MAGEB1P43366 347 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 PCGF3Q3KNV8 242 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 TMEM42Q69YG0 159 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 PAMR1Q6UXH9 720 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 UNQ9370/PRO34162Q6UXP9 181 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 MOB3CQ70IA8 216 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 SERPINA12Q8IW75 414 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 PARP16Q8N5Y8 322 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 SPERTQ8NA61 448 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 OR2Z1Q8NG97 314 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 OR5D14Q8NGL3 314 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 IGFBPL1Q8WX77 278 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 GTF3AQ92664 365 aaKnown RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 ADAT3Q96EY9 351 aaPredicted RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 OR14A2Q96R54 314 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 CACNG6Q9BXT2 260 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 LIME1Q9H400 295 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 CXorf56Q9H5V9 222 aa13.44□□□□□ -0.26
USP40-206ENST00000443711 SETXQ7Z333 2677 aaKnown RBP13.44□□□□□ -0.26
USP40-206ENST00000443711 ANKRD61A6NGH8 418 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ANXA2P2A6NMY6 339 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 H0YL77 283 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 H7C417 338 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 OVOL3O00110 214 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 MLNRO43193 412 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 RGS9O75916 674 aaPredicted RBP13.43□□□□□ -0.26
USP40-206ENST00000443711 IGHV1-46P01743 117 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 RAF1P04049 648 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 TFAP2AP05549 437 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ERCC1P07992 297 aaPredicted RBP13.43□□□□□ -0.26
USP40-206ENST00000443711 CD36P16671 472 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 MZT1Q08AG7 82 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 UTS2BQ765I0 119 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 CEACAM19Q7Z692 300 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ZDHHC23Q8IYP9 409 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 OR8S1Q8NH09 359 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 NRGNQ92686 78 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 TMEM106AQ96A25 262 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ELMOD3Q96FG2 381 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 TECTBQ96PL2 329 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 MICU1Q9BPX6 476 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ADAT1Q9BUB4 502 aaKnown RBP13.43□□□□□ -0.26
USP40-206ENST00000443711 CHST5Q9GZS9 411 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 RAB1BQ9H0U4 201 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ZCCHC4Q9H5U6 513 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms