RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 C1orf210Q8IVY1 113 aa13.55□□□□□ -0.24
UPF3B-202ENST00000345865 COQ8AQ8NI60 647 aa13.55□□□□□ -0.24
UPF3B-202ENST00000345865 MARCH1Q8TCQ1 289 aa13.55□□□□□ -0.24
UPF3B-202ENST00000345865 ASB13Q8WXK3 278 aa13.55□□□□□ -0.24
UPF3B-202ENST00000345865 NAA11Q9BSU3 229 aaPredicted RBP13.55□□□□□ -0.24
UPF3B-202ENST00000345865 V9GYS6 101 aa13.55□□□□□ -0.24
UPF3B-202ENST00000345865 DOCK10Q96BY6 2186 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 MFNGO00587 321 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 GSTP1P09211 210 aaKnown RBP13.54□□□□□ -0.24
UPF3B-202ENST00000345865 PRF1P14222 555 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 NAT1P18440 290 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 SUCLG1P53597 346 aaKnown RBP13.54□□□□□ -0.24
UPF3B-202ENST00000345865 IL13RA1P78552 427 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 ECH1Q13011 328 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 SNAI3Q3KNW1 292 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 LRRC37A5PQ49AS3 106 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 TCEAL6Q6IPX3 200 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 RGS7BPQ6MZT1 257 aaPredicted RBP13.54□□□□□ -0.24
UPF3B-202ENST00000345865 ZNF546Q86UE3 836 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 C20orf196Q8IYI0 205 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 OR10K1Q8NGX5 313 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 MITD1Q8WV92 249 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 TCEAL3Q969E4 200 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 PIGQQ9BRB3 760 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 ULBP2Q9BZM5 246 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 WDR13Q9H1Z4 485 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 RDH8Q9NYR8 311 aa13.54□□□□□ -0.24
UPF3B-202ENST00000345865 A0A0U1RQV5 110 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 STMND1H3BQB6 276 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 DHRS3O75911 302 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 NR2C1P13056 603 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 AKR1C4P17516 323 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 CALCRP30988 508 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 OTX2P32243 289 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 PTGFRP43088 359 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 ZMYND11Q15326 602 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 TIPARPQ7Z3E1 657 aaKnown RBP13.53□□□□□ -0.24
UPF3B-202ENST00000345865 HOGA1Q86XE5 327 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 FAM89BQ8N5H3 189 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 OR6K3Q8NGY3 331 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 SCARB1Q8WTV0 552 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 CASTOR1Q8WTX7 329 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 FBXW5Q969U6 566 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 PLEK2Q9NYT0 353 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 SPDEFO95238 335 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 IFNA6P05013 189 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 HLA-GP17693 338 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 ZXDAP98168 799 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 GGNQ86UU5 652 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 RBPMSQ93062 196 aaKnown RBP13.53□□□□□ -0.24
UPF3B-202ENST00000345865 CCDC120Q96HB5 630 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 TCFL5Q9UL49 500 aa13.53□□□□□ -0.24
UPF3B-202ENST00000345865 FOXI3A8MTJ6 420 aaPredicted RBP13.52□□□□□ -0.24
UPF3B-202ENST00000345865 M0R135 149 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 RLN2P04090 185 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 NAT2P11245 290 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 TBPP20226 339 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 STARP49675 285 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 ATP1B3P54709 279 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 RPS27AP62979 156 aaKnown RBP13.52□□□□□ -0.24
UPF3B-202ENST00000345865 HGFACQ04756 655 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 GK2Q14410 553 aaPredicted RBP13.52□□□□□ -0.24
UPF3B-202ENST00000345865 PPP1R1CQ8WVI7 109 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 ZNF799Q96GE5 643 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 PIGLQ9Y2B2 252 aa13.52□□□□□ -0.24
UPF3B-202ENST00000345865 hCG_1807616A0A1W2PRN6 198 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 LRRC3CA6NJW4 275 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 TEX46H3BTG2 121 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 VAMP1P23763 118 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 THBS4P35443 961 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 PRSS12P56730 875 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 CLDN15P56746 228 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 RAC3P60763 192 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 FAM27BQ5VT28 67 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 LPCAT3Q6P1A2 487 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 TMEM65Q6PI78 240 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 Q6ZSR3 168 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 TMEM105Q8N8V8 129 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 OR56B1Q8NGI3 324 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 PIGTQ969N2 578 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 SGK3Q96BR1 496 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 SGCZQ96LD1 299 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 OCSTAMPQ9BR26 566 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 PDCD10Q9BUL8 212 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 CHST5Q9GZS9 411 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 OR10A2Q9H208 303 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 DEPPQ9NTK1 212 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 FLVCR1Q9Y5Y0 555 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 KCNMB2Q9Y691 235 aa13.52□□□□□ -0.25
UPF3B-202ENST00000345865 CCDC187A0A096LP49 1063 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 MFSD2BA6NFX1 497 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 B4E171 279 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 F10P00742 488 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 FCGR2AP12318 317 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 TCN2P20062 427 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 SRD5A2P31213 254 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 TSPAN7P41732 249 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 ALDH3B1P43353 468 aa13.51□□□□□ -0.25
UPF3B-202ENST00000345865 MRPS34P82930 218 aaKnown RBP13.51□□□□□ -0.25
UPF3B-202ENST00000345865 SIGIRRQ6IA17 410 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms