RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ONECUT2O95948 504 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 GUSBP08236 651 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 SRP14P37108 136 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 KIR3DL2P43630 455 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 MMP15P51511 669 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 FBXL14Q8N1E6 418 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 PCYT2Q99447 389 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 LHX3Q9UBR4 397 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 RCL1Q9Y2P8 373 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 KLF13Q9Y2Y9 288 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 FURINP09958 794 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 TEAD1P28347 426 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 FOXA1P55317 472 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 CD81P60033 236 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 NUDT10Q8NFP7 164 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 SLAMF6Q96DU3 332 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 NUDT11Q96G61 164 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 RAB40CQ96S21 281 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 SPNS1Q9H2V7 528 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 LYRM4Q9HD34 91 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 DHRS7CA6NNS2 312 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 ISLRO14498 428 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 OSR2Q8N2R0 312 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 C1QTNF3Q9BXJ4 246 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 TSPAN13O95857 204 aa12.65□□□□□ -0.39
CCDC88A-201ENST00000263630 TMEM128Q5BJH2 165 aa12.65□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF519Q8TB69 540 aa12.65□□□□□ -0.39
CCDC88A-201ENST00000263630 KTI12Q96EK9 354 aaPredicted RBP12.65□□□□□ -0.39
CCDC88A-201ENST00000263630 FAM210BQ96KR6 192 aa12.65□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF737O75373 536 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 HIST1H1EP10412 219 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 FABP2P12104 132 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 PITPNC1Q9UKF7 332 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 NTNG1Q9Y2I2 539 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 SVILO95425 2214 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 CABIN1Q9Y6J0 2220 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 CTBSQ01459 385 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 HIST3H3Q16695 136 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 DNAL4O96015 105 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 CSNK1DP48730 415 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 OR2A2Q6IF42 318 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 SPNS3Q6ZMD2 512 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 BTLAQ7Z6A9 289 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 TMEM167BQ9NRX6 74 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 FITM1A5D6W6 292 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 OR4C46A6NHA9 309 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 JOSD1Q15040 202 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 SARAFQ96BY9 339 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 EGLN2Q96KS0 407 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 MYOZ1Q9NP98 299 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 CEACAM3P40198 252 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 ST3GAL6Q9Y274 331 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 RPS4Y1P22090 263 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 PCSK6P29122 969 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 HAAOP46952 286 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 FUT6P51993 359 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 RGS7BPQ6MZT1 257 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 SMN1Q16637 294 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 LILRA2Q8N149 483 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 WFDC8Q8IUA0 241 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 PLPP6Q8IY26 295 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 TMED3Q9Y3Q3 217 aa12.64□□□□□ -0.39
CCDC88A-201ENST00000263630 SCN1AP35498 2009 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 CHD5Q8TDI0 1954 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 MDH2P40926 338 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 AANATQ16613 207 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 NANOGP1Q8N7R0 232 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 SORT1Q99523 831 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 WRAP73Q9P2S5 460 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 CACNA1SQ13698 1873 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 A0A1W2PPC4 97 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 SERTM1A2A2V5 107 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 AKR7A3O95154 331 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF26P17031 533 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 MAT1AQ00266 395 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 NPWQ8N729 165 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 EDAQ92838 391 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 C3P01024 1663 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 MTCL1Q9Y4B5 1905 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 GABRB1P18505 474 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 FAM71E1Q6IPT2 247 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 OR6S1Q8NH40 331 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 TINAGL1Q9GZM7 467 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 SLC10A3P09131 477 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 PLP1P60201 277 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 JAG1P78504 1218 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 ELAVL1Q15717 326 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF680Q8NEM1 530 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 IL22RA2Q969J5 263 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 GPR84Q9NQS5 396 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 IL17CQ9P0M4 197 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 RBPJLQ9UBG7 517 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF865P0CJ78 1059 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 TNFRSF10CO14798 259 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 RPEQ96AT9 228 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 HSD17B10Q99714 261 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 HCRTO43612 131 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 CTNSO60931 367 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 SELENBP1Q13228 472 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms