RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	HOF1	Q05080	669 aa		4.65	□□□□□ -1.67
CUP9	YPL177C	NUP145	P49687	1317 aa		4.65	□□□□□ -1.67
CUP9	YPL177C	TSR4	P25040	408 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	NGG1	P32494	702 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	PRP19	P32523	503 aa	Known RBP	4.64	□□□□□ -1.67
CUP9	YPL177C	MNN4	P36044	1178 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	YKR018C	P36114	725 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	BCD1	P38772	366 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	PMT3	P47190	753 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	YGR237C	P50089	785 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	TEL2	P53038	688 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	GPG1	P53130	126 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	ARP4	P80428	489 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	UME1	Q03010	460 aa		4.64	□□□□□ -1.67
CUP9	YPL177C	GRX4	P32642	244 aa		4.63	□□□□□ -1.67
CUP9	YPL177C	MIP6	P38760	659 aa	Known RBP	4.63	□□□□□ -1.67
CUP9	YPL177C	YEN1	P40028	759 aa		4.63	□□□□□ -1.67
CUP9	YPL177C	PCL10	P53124	433 aa		4.63	□□□□□ -1.67
CUP9	YPL177C	ORC4	P54791	529 aa		4.63	□□□□□ -1.67
CUP9	YPL177C	SMX3	P54999	86 aa	Predicted RBP	4.63	□□□□□ -1.67
CUP9	YPL177C	LEE1	Q02799	301 aa	Known RBP	4.63	□□□□□ -1.67
CUP9	YPL177C	MTQ2	Q03920	221 aa	Predicted RBP	4.63	□□□□□ -1.67
CUP9	YPL177C	HIS7	P33734	552 aa	Known RBP	4.62	□□□□□ -1.67
CUP9	YPL177C	CKB2	P38930	258 aa		4.62	□□□□□ -1.67
CUP9	YPL177C	CCT7	P42943	550 aa	Known RBP	4.62	□□□□□ -1.67
CUP9	YPL177C	SSL2	Q00578	843 aa		4.62	□□□□□ -1.67
CUP9	YPL177C	THI7	Q05998	598 aa		4.62	□□□□□ -1.67
CUP9	YPL177C	TAF3	Q12297	353 aa		4.62	□□□□□ -1.67
CUP9	YPL177C	ADE2	P21264	571 aa	Known RBP	4.61	□□□□□ -1.67
CUP9	YPL177C	CBR1	P38626	284 aa	Known RBP	4.61	□□□□□ -1.67
CUP9	YPL177C	PRP31	P49704	494 aa	Predicted RBP	4.61	□□□□□ -1.67
CUP9	YPL177C	UBC11	P52492	156 aa		4.61	□□□□□ -1.67
CUP9	YPL177C	YBP2	P53169	641 aa		4.61	□□□□□ -1.67
CUP9	YPL177C	ATG11	Q12527	1178 aa		4.61	□□□□□ -1.67
CUP9	YPL177C	DMC1	P25453	334 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	HIR1	P32479	840 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	YBR259W	P38338	688 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	GPP1	P41277	250 aa	Known RBP	4.6	□□□□□ -1.67
CUP9	YPL177C	BAP3	P41815	604 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	YGL081W	P53156	320 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	BRE5	P53741	515 aa	Known RBP	4.6	□□□□□ -1.67
CUP9	YPL177C	FAP7	Q12055	197 aa	Predicted RBP	4.6	□□□□□ -1.67
CUP9	YPL177C	DCS2	Q12123	353 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	ICT1	Q12385	394 aa		4.6	□□□□□ -1.67
CUP9	YPL177C	EMP70	P32802	667 aa		4.59	□□□□□ -1.67
CUP9	YPL177C	TDA3	P38758	523 aa		4.59	□□□□□ -1.67
CUP9	YPL177C	YJL206C	P39529	758 aa		4.59	□□□□□ -1.67
CUP9	YPL177C	TEX1	P53851	422 aa	Known RBP	4.59	□□□□□ -1.67
CUP9	YPL177C	SIR3	P06701	978 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	TMT1	P32643	299 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	YHR112C	P38716	378 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	SSZ1	P38788	538 aa	Known RBP	4.58	□□□□□ -1.68
CUP9	YPL177C	RET2	P43621	546 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	ARG5,6	Q01217	863 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	HFD1	Q04458	532 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	YAP7	Q08182	245 aa		4.58	□□□□□ -1.68
CUP9	YPL177C	ERG6	P25087	383 aa	Known RBP	4.57	□□□□□ -1.68
CUP9	YPL177C	NUG1	P40010	520 aa	Known RBP	4.57	□□□□□ -1.68
CUP9	YPL177C	YJR039W	P47107	1121 aa		4.57	□□□□□ -1.68
CUP9	YPL177C	YGR153W	P48238	217 aa		4.57	□□□□□ -1.68
CUP9	YPL177C	APM1	Q00776	475 aa	Predicted RBP	4.57	□□□□□ -1.68
CUP9	YPL177C	YTM1	Q12024	460 aa	Predicted RBP	4.57	□□□□□ -1.68
CUP9	YPL177C	APL2	P36000	726 aa	Predicted RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	AKL1	P38080	1108 aa	Known RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	OAF1	P39720	1047 aa	Predicted RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	YNL195C	P40168	261 aa		4.56	□□□□□ -1.68
CUP9	YPL177C	CCT5	P40413	562 aa	Known RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	GZF3	P42944	551 aa	Known RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	SET2	P46995	733 aa	Known RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	YAP1802	P53309	568 aa		4.56	□□□□□ -1.68
CUP9	YPL177C	ECM9	Q02202	377 aa		4.56	□□□□□ -1.68
CUP9	YPL177C	GAD1	Q04792	585 aa		4.56	□□□□□ -1.68
CUP9	YPL177C	RPS21B	Q3E754	87 aa	Known RBP	4.56	□□□□□ -1.68
CUP9	YPL177C	SPO11	P23179	398 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	APN2	P38207	520 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	UBS1	P38290	277 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	YHR202W	P38887	602 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	ECM1	P39715	212 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	NDC80	P40460	691 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	MTL1	P53214	551 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	COX18	P53239	316 aa		4.55	□□□□□ -1.68
CUP9	YPL177C	PYC1	P11154	1178 aa	Known RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	APT2	P36973	181 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	MAL31	P38156	614 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	LYS9	P38999	446 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	HXT6	P39003	570 aa	Known RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	HXT7	P39004	570 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	BEM4	P39011	633 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	YEL020C	P39994	560 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	GID8	P40208	455 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	BFA1	P47113	574 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	YJR120W	P47157	116 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	GPD1	Q00055	391 aa	Known RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	RGC1	Q06108	1083 aa	Known RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	MCM21	Q06675	368 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	ISA1	Q07821	250 aa	Predicted RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	TMA17	Q12513	150 aa		4.54	□□□□□ -1.68
CUP9	YPL177C	HRP1	Q99383	534 aa	Known RBP	4.54	□□□□□ -1.68
CUP9	YPL177C	RPS21A	P0C0V8	87 aa	Known RBP	4.53	□□□□□ -1.68
CUP9	YPL177C	RNR1	P21524	888 aa	Known RBP	4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms