RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	ULP2	P40537	1034 aa	Predicted RBP	0.89	□□□□□ -2.27
NIP1	YMR309C	IRC8	P47046	822 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	NPY1	P53164	384 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	MTL1	P53214	551 aa		0.89	□□□□□ -2.27
NIP1	YMR309C	CLF1	Q12309	687 aa	Predicted RBP	0.89	□□□□□ -2.27
NIP1	YMR309C	THR1	P17423	357 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	NUP1	P20676	1076 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	GSY1	P23337	708 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	SAT4	P25333	603 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	KCC4	P25389	1037 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	SRP40	P32583	406 aa	Predicted RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	APL2	P36000	726 aa	Predicted RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	BET3	P36149	193 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	DOT6	P40059	670 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	NNF1	P47149	201 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	RTA1	P53047	317 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	STP1	Q00947	519 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	ATP25	Q03153	612 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	HFD1	Q04458	532 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	YBR182C-A	Q8TGU6	64 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	ADE5,7	P07244	802 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	STI1	P15705	589 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
NIP1	YMR309C	RPA135	P22138	1203 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	SEC15	P22224	910 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	UGP1	P32861	499 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	YKL091C	P33324	310 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	STO1	P34160	861 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	YMC2	P38087	329 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	YHR112C	P38716	378 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	MIT1	P40002	666 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	PSA1	P41940	361 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	FMP30	Q02883	468 aa		0.88	□□□□□ -2.27
NIP1	YMR309C	BMS1	Q08965	1183 aa	Known RBP	0.88	□□□□□ -2.27
NIP1	YMR309C	YMC1	P32331	307 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	SET3	P36124	751 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	SLX1	P38324	304 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	BFA1	P47113	574 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
NIP1	YMR309C	ARG5,6	Q01217	863 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	NSE3	Q05541	303 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	RPN7	Q06103	429 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	MCM21	Q06675	368 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	DIA2	Q08496	732 aa	Predicted RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	USV1	Q12132	391 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	ZRT2	Q12436	422 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	HRP1	Q99383	534 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	Q0142	Q9ZZW4	58 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	PHO5	P00635	467 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	ABF1	P14164	731 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	ADE2	P21264	571 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	ECM32	P32644	1121 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	HOT13	P36078	116 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	YHR020W	P38708	688 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	CRP1	P38845	465 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	PMC1	P38929	1173 aa	Predicted RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	CCT4	P39078	528 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	GDH3	P39708	457 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	CHZ1	P40019	153 aa	Predicted RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	PIG2	P40187	538 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	TAX4	P47030	604 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	HXT16	P47185	567 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	SPC98	P53540	846 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	REC102	Q02721	264 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	HMO1	Q03973	246 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	YDR338C	Q05497	695 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	RGC1	Q06108	1083 aa	Known RBP	0.87	□□□□□ -2.27
NIP1	YMR309C	ULA1	Q12059	462 aa		0.87	□□□□□ -2.27
NIP1	YMR309C	ERR1	P0CX10	437 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	ERR2	P0CX11	437 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	RAD18	P10862	487 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	STE12	P13574	688 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	PEX1	P24004	1043 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	VBA3	P25594	458 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	YKR075C	P36155	307 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	APN2	P38207	520 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	HSL7	P38274	827 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	ATG36	P46983	293 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	BNA2	P47125	453 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	ASN1	P49089	572 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	YGR151C	P53287	111 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	SNP1	Q00916	300 aa	Predicted RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	NHX1	Q04121	633 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	YOL098C	Q12496	1037 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	ECM3	Q99252	613 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	CDC9	P04819	755 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	RNR1	P21524	888 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	PRP28	P23394	588 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	ERG6	P25087	383 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	THI4	P32318	326 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	EUG1	P32474	517 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	TIM23	P32897	222 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	YEL1	P34225	687 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	MTC2	P34246	357 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	YKR051W	P36142	418 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	GET2	P40056	285 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	GID8	P40208	455 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	GPD1	Q00055	391 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	YDL086W	Q07505	273 aa		0.86	□□□□□ -2.27
NIP1	YMR309C	NEW1	Q08972	1196 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	YLR125W	Q12138	136 aa		0.86	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms