RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	GMH1	P36125	273 aa		4.77	□□□□□ -1.65
UBP8	YMR223W	SLK19	Q08581	821 aa	Known RBP	4.77	□□□□□ -1.65
UBP8	YMR223W	CDC53	Q12018	815 aa	Known RBP	4.77	□□□□□ -1.65
UBP8	YMR223W	ABF1	P14164	731 aa		4.76	□□□□□ -1.65
UBP8	YMR223W	RNR1	P21524	888 aa	Known RBP	4.76	□□□□□ -1.65
UBP8	YMR223W	GET2	P40056	285 aa		4.76	□□□□□ -1.65
UBP8	YMR223W	SEG1	Q04279	960 aa		4.76	□□□□□ -1.65
UBP8	YMR223W	DIA2	Q08496	732 aa	Predicted RBP	4.76	□□□□□ -1.65
UBP8	YMR223W	MDM12	Q92328	271 aa		4.76	□□□□□ -1.65
UBP8	YMR223W	PRP28	P23394	588 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	KCC4	P25389	1037 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	YKR018C	P36114	725 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	HSL7	P38274	827 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	MAL11	P53048	616 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	USV1	Q12132	391 aa		4.75	□□□□□ -1.65
UBP8	YMR223W	NNF1	P47149	201 aa		4.74	□□□□□ -1.65
UBP8	YMR223W	IOC4	Q04213	475 aa		4.74	□□□□□ -1.65
UBP8	YMR223W	RPN7	Q06103	429 aa	Known RBP	4.74	□□□□□ -1.65
UBP8	YMR223W	YOR131C	Q12486	218 aa		4.74	□□□□□ -1.65
UBP8	YMR223W	Q0142	Q9ZZW4	58 aa		4.74	□□□□□ -1.65
UBP8	YMR223W	GSY1	P23337	708 aa		4.73	□□□□□ -1.65
UBP8	YMR223W	NOP9	P47077	666 aa	Known RBP	4.73	□□□□□ -1.65
UBP8	YMR223W	PCL10	P53124	433 aa		4.73	□□□□□ -1.65
UBP8	YMR223W	RIM13	Q03792	727 aa		4.73	□□□□□ -1.65
UBP8	YMR223W	NHX1	Q04121	633 aa		4.73	□□□□□ -1.65
UBP8	YMR223W	RGC1	Q06108	1083 aa	Known RBP	4.73	□□□□□ -1.65
UBP8	YMR223W	OSW1	Q08692	278 aa		4.73	□□□□□ -1.65
UBP8	YMR223W	BMS1	Q08965	1183 aa	Known RBP	4.73	□□□□□ -1.65
UBP8	YMR223W	SET3	P36124	751 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	BIT2	P38346	545 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	PIG2	P40187	538 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	LTP1	P40347	161 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	THI22	Q06490	572 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	CDC9	P04819	755 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	YKR051W	P36142	418 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	YGR151C	P53287	111 aa		4.72	□□□□□ -1.65
UBP8	YMR223W	HOG1	P32485	435 aa		4.71	□□□□□ -1.66
UBP8	YMR223W	BCS1	P32839	456 aa		4.71	□□□□□ -1.66
UBP8	YMR223W	SEC6	P32844	805 aa		4.71	□□□□□ -1.66
UBP8	YMR223W	RSC8	P43609	557 aa	Known RBP	4.71	□□□□□ -1.66
UBP8	YMR223W	BNA3	P47039	444 aa	Known RBP	4.71	□□□□□ -1.66
UBP8	YMR223W	COG8	Q04632	607 aa		4.71	□□□□□ -1.66
UBP8	YMR223W	CIT2	P08679	460 aa		4.7	□□□□□ -1.66
UBP8	YMR223W	RPA135	P22138	1203 aa	Known RBP	4.7	□□□□□ -1.66
UBP8	YMR223W	MIH1	P23748	554 aa		4.7	□□□□□ -1.66
UBP8	YMR223W	ERR1	P0CX10	437 aa		4.69	□□□□□ -1.66
UBP8	YMR223W	ERR2	P0CX11	437 aa		4.69	□□□□□ -1.66
UBP8	YMR223W	YMC2	P38087	329 aa		4.69	□□□□□ -1.66
UBP8	YMR223W	SET2	P46995	733 aa	Known RBP	4.69	□□□□□ -1.66
UBP8	YMR223W	COX18	P53239	316 aa		4.69	□□□□□ -1.66
UBP8	YMR223W	SPC98	P53540	846 aa		4.69	□□□□□ -1.66
UBP8	YMR223W	CHS5	Q12114	671 aa	Known RBP	4.69	□□□□□ -1.66
UBP8	YMR223W	PGK1	P00560	416 aa	Known RBP	4.68	□□□□□ -1.66
UBP8	YMR223W	RAD18	P10862	487 aa		4.68	□□□□□ -1.66
UBP8	YMR223W	SAT4	P25333	603 aa	Known RBP	4.68	□□□□□ -1.66
UBP8	YMR223W	UGP1	P32861	499 aa	Known RBP	4.68	□□□□□ -1.66
UBP8	YMR223W	APN2	P38207	520 aa		4.68	□□□□□ -1.66
UBP8	YMR223W	YDL086W	Q07505	273 aa		4.68	□□□□□ -1.66
UBP8	YMR223W	YOL098C	Q12496	1037 aa		4.68	□□□□□ -1.66
UBP8	YMR223W	PTP1	P25044	335 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	YEL1	P34225	687 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	CTP1	P38152	299 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	ARP4	P80428	489 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	RPN4	Q03465	531 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	ECM3	Q99252	613 aa		4.67	□□□□□ -1.66
UBP8	YMR223W	ADE5,7	P07244	802 aa	Known RBP	4.66	□□□□□ -1.66
UBP8	YMR223W	APL3	P38065	1025 aa		4.66	□□□□□ -1.66
UBP8	YMR223W	KSP1	P38691	1029 aa	Known RBP	4.66	□□□□□ -1.66
UBP8	YMR223W	SRD1	P09007	221 aa		4.65	□□□□□ -1.66
UBP8	YMR223W	VBA3	P25594	458 aa		4.65	□□□□□ -1.66
UBP8	YMR223W	MIT1	P40002	666 aa		4.65	□□□□□ -1.66
UBP8	YMR223W	MPS3	P47069	682 aa		4.65	□□□□□ -1.66
UBP8	YMR223W	YSH1	Q06224	779 aa	Predicted RBP	4.65	□□□□□ -1.66
UBP8	YMR223W	ERG11	P10614	530 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	FEN2	P25621	512 aa	Known RBP	4.64	□□□□□ -1.67
UBP8	YMR223W	NTH1	P32356	751 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	PMC1	P38929	1173 aa	Predicted RBP	4.64	□□□□□ -1.67
UBP8	YMR223W	DSS1	P39112	969 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	NET1	P47035	1189 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	LEE1	Q02799	301 aa	Known RBP	4.64	□□□□□ -1.67
UBP8	YMR223W	FMP30	Q02883	468 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	UGO1	Q03327	502 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	POM34	Q12445	299 aa		4.64	□□□□□ -1.67
UBP8	YMR223W	PHO5	P00635	467 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	STE12	P13574	688 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	SRP40	P32583	406 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	SSZ1	P38788	538 aa	Known RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	YHR097C	P38809	366 aa	Known RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	DOT6	P40059	670 aa	Known RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	KHA1	P40309	873 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	GAT1	P43574	510 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	YJR039W	P47107	1121 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	BRE5	P53741	515 aa	Known RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	YLR125W	Q12138	136 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	MEF1	P25039	761 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	TIM23	P32897	222 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	AKL1	P38080	1108 aa	Known RBP	4.63	□□□□□ -1.67
UBP8	YMR223W	YNL195C	P40168	261 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	BUD6	P41697	788 aa		4.63	□□□□□ -1.67
UBP8	YMR223W	GPD1	Q00055	391 aa	Known RBP	4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 1727.3 ms