RNA–Protein interactions for RNA: ENST00000640859.1

GFAP-238, Transcript of glial fibrillary acidic protein, human

TSL 5

Gene GFAP, Length 1,162 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GFAP-238	ENST00000640859	ADCK5	Q3MIX3	580 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	TSGA10IP	Q3SY00	556 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	MCMDC2	Q4G0Z9	681 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	VPS53	Q5VIR6	699 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	SUSD4	Q5VX71	490 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	DDX46	Q7L014	1031 aa	Known RBP	13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	RUFY3	Q7L099	469 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	XAGE2	Q96GT9	111 aa		13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	JAKMIP1	Q96N16	626 aa	Known RBP	13.5	□□□□□ -0.25
GFAP-238	ENST00000640859	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	GOLIM4	O00461	696 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	ZKSCAN1	P17029	563 aa	Predicted RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	CAST	P20810	708 aa	Known RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	ADORA1	P30542	326 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	PKP1	Q13835	747 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	PARP10	Q53GL7	1025 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	ZMYM1	Q5SVZ6	1142 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	NOL8	Q76FK4	1167 aa	Known RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	COL23A1	Q86Y22	540 aa	Predicted RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	ARHGEF1	Q92888	912 aa	Known RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	UTP14A	Q9BVJ6	771 aa	Known RBP	13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	HELLS	Q9NRZ9	838 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	PDRG1	Q9NUG6	133 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	HMG20B	Q9P0W2	317 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	LIMCH1	Q9UPQ0	1083 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	CYP46A1	Q9Y6A2	500 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	BCOR	Q6W2J9	1755 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	LRP5	O75197	1615 aa		13.49	□□□□□ -0.25
GFAP-238	ENST00000640859	ABCC12	Q96J65	1359 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	DDX60	Q8IY21	1712 aa	Known RBP	13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	NPHP1	O15259	732 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	ZBTB7A	O95365	584 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	CHGB	P05060	677 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	CPA1	P15085	419 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	PSMA5	P28066	241 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	KCNJ4	P48050	445 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	CCDC158	Q5M9N0	1113 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	RNF20	Q5VTR2	975 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	LDHAL6A	Q6ZMR3	332 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	VGLL2	Q8N8G2	317 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	NARF	Q9UHQ1	456 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	LAMB2	P55268	1798 aa		13.48	□□□□□ -0.25
GFAP-238	ENST00000640859	RNF113A	O15541	343 aa	Known RBP	13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	BRD1	O95696	1058 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	ATP2B3	Q16720	1220 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	METTL24	Q5JXM2	366 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	TTC39A	Q5SRH9	613 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	CCDC129	Q6ZRS4	1044 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	SEC62	Q99442	399 aa	Known RBP	13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	AKAP11	Q9UKA4	1901 aa		13.47	□□□□□ -0.25
GFAP-238	ENST00000640859	RGL2	O15211	777 aa		13.46	□□□□□ -0.25
GFAP-238	ENST00000640859	NTSR2	O95665	410 aa		13.46	□□□□□ -0.25
GFAP-238	ENST00000640859	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.46	□□□□□ -0.25
GFAP-238	ENST00000640859	CNNM1	Q9NRU3	951 aa		13.46	□□□□□ -0.25
GFAP-238	ENST00000640859	RTL9	Q8NET4	1388 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	HCLS1	P14317	486 aa	Predicted RBP	13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	GORAB	Q5T7V8	394 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	CLEC4G	Q6UXB4	293 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	PARP3	Q9Y6F1	533 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	TAF6L	Q9Y6J9	622 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	TAF1L	Q8IZX4	1826 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	MYH7	P12883	1935 aa		13.45	□□□□□ -0.26
GFAP-238	ENST00000640859	ARAP2	Q8WZ64	1704 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	GOLGA6L22	H0YM25	854 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	PDE8B	O95263	885 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	LARGE1	O95461	756 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	HSP90B1	P14625	803 aa	Known RBP	13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	FGFR2	P21802	821 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	RPS6KB1	P23443	525 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	SCARF1	Q14162	830 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	KRT32	Q14532	448 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	SLFNL1	Q499Z3	407 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	BLOC1S2	Q6QNY1	142 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	LARP6	Q9BRS8	491 aa	Known RBP	13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	DSCC1	Q9BVC3	393 aa		13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
GFAP-238	ENST00000640859	MROH5	Q6ZUA9	1318 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	ZFY	P08048	801 aa	Predicted RBP	13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	GYS1	P13807	737 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	ZAP70	P43403	619 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	COL9A3	Q14050	684 aa	Predicted RBP	13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	MSL1	Q68DK7	614 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	SETDB2	Q96T68	719 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	LMBRD1	Q9NUN5	540 aa		13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.43	□□□□□ -0.26
GFAP-238	ENST00000640859	MAST3	O60307	1309 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	LAMA4	Q16363	1823 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	FAM177B	A6PVY3	158 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	GTF2E1	P29083	439 aa	Predicted RBP	13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	ST3GAL1	Q11201	340 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	CCDC152	Q4G0S7	254 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	MCTP1	Q6DN14	999 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	LPIN2	Q92539	896 aa		13.42	□□□□□ -0.26
GFAP-238	ENST00000640859	OSBP2	Q969R2	916 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms