RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 APOBRQ0VD83 1088 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 GLIPR1L2Q4G1C9 344 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 LUZP1Q86V48 1076 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 EVCP57679 992 aa15.02■□□□□ -0
LINC00540-203ENST00000631321 TRIM28Q13263 835 aaKnown RBP15.02■□□□□ -0
LINC00540-203ENST00000631321 ZNF594Q96JF6 807 aaPredicted RBP15.02■□□□□ -0
LINC00540-203ENST00000631321 ZBTB3Q9H5J0 574 aa15.02■□□□□ -0
LINC00540-203ENST00000631321 CCDC9Q9Y3X0 531 aaKnown RBP15.02■□□□□ -0
LINC00540-203ENST00000631321 COL5A2P05997 1499 aaPredicted RBP15.02□□□□□ -0.01
LINC00540-203ENST00000631321 GTF2F1P35269 517 aaKnown RBP eCLIP15.02□□□□□ -0.01
LINC00540-203ENST00000631321 PDIA3P30101 505 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 LRRFIP1Q32MZ4 808 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 MTERF4Q7Z6M4 381 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 PLA2G4DQ86XP0 818 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 C17orf53Q8N3J3 647 aaPredicted RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 PUS3Q9BZE2 481 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 CEP126Q9P2H0 1117 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 PYCARDQ9ULZ3 195 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 M0R2C6 588 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 RBM10P98175 930 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 DNTTIP2Q5QJE6 756 aaKnown RBP15.01□□□□□ -0.01
LINC00540-203ENST00000631321 TOM1L2Q6ZVM7 507 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 CARD10Q9BWT7 1032 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 PLA2G12BQ9BX93 195 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 LAMA4Q16363 1823 aa15.01□□□□□ -0.01
LINC00540-203ENST00000631321 ABCC12Q96J65 1359 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 A0A0G2JLW4 131 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 CTAGE5O15320 804 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 ZFYP08048 801 aaPredicted RBP15□□□□□ -0.01
LINC00540-203ENST00000631321 TCIRG1Q13488 830 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 BRINP3Q76B58 766 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 OSBP2Q969R2 916 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 PRDM11Q9NQV5 511 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 AKAP2Q9Y2D5 859 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 IL2RBP14784 551 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 ZNF75DP51815 510 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 SPC24Q8NBT2 197 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 ZNF396Q96N95 335 aaPredicted RBP15□□□□□ -0.01
LINC00540-203ENST00000631321 FAM13BQ9NYF5 915 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 CTNNA3Q9UI47 895 aa15□□□□□ -0.01
LINC00540-203ENST00000631321 ZNF165P49910 485 aa14.99□□□□□ -0.01
LINC00540-203ENST00000631321 FOXP2O15409 715 aa14.98□□□□□ -0.01
LINC00540-203ENST00000631321 CCDC57Q2TAC2 916 aa14.98□□□□□ -0.01
LINC00540-203ENST00000631321 CCDC158Q5M9N0 1113 aa14.98□□□□□ -0.01
LINC00540-203ENST00000631321 PCCAP05165 728 aaPredicted RBP14.98□□□□□ -0.01
LINC00540-203ENST00000631321 CSF1RP07333 972 aa14.98□□□□□ -0.01
LINC00540-203ENST00000631321 CCT2P78371 535 aaKnown RBP14.98□□□□□ -0.01
LINC00540-203ENST00000631321 DNAJC25Q9H1X3 360 aa14.98□□□□□ -0.01
LINC00540-203ENST00000631321 NCOA5Q9HCD5 579 aaKnown RBP14.98□□□□□ -0.01
LINC00540-203ENST00000631321 CDC25BP30305 580 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 SNW1Q13573 536 aaKnown RBP14.97□□□□□ -0.01
LINC00540-203ENST00000631321 TTLL5Q6EMB2 1281 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 ILDR1Q86SU0 546 aaPredicted RBP14.97□□□□□ -0.01
LINC00540-203ENST00000631321 CCAR1Q8IX12 1150 aaKnown RBP14.97□□□□□ -0.01
LINC00540-203ENST00000631321 ENGASEQ8NFI3 743 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 XAGE2Q96GT9 111 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 USP28Q96RU2 1077 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 CARMIL3Q8ND23 1372 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 SOS2Q07890 1332 aaPredicted RBP14.97□□□□□ -0.01
LINC00540-203ENST00000631321 FDPSP14324 419 aaKnown RBP14.97□□□□□ -0.01
LINC00540-203ENST00000631321 PTGS1P23219 599 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 IQCB1Q15051 598 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 TTC39AQ5SRH9 613 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 SARM1Q6SZW1 724 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 GOLPH3LQ9H4A5 285 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 SHANK3Q9BYB0 1731 aa14.97□□□□□ -0.01
LINC00540-203ENST00000631321 ADORA1P30542 326 aa14.96□□□□□ -0.01
LINC00540-203ENST00000631321 FKBP4Q02790 459 aaKnown RBP eCLIP14.96□□□□□ -0.01
LINC00540-203ENST00000631321 VSIG10Q8N0Z9 540 aa14.96□□□□□ -0.01
LINC00540-203ENST00000631321 APPBP2Q92624 585 aa14.96□□□□□ -0.01
LINC00540-203ENST00000631321 TRIM5Q9C035 493 aa14.96□□□□□ -0.01
LINC00540-203ENST00000631321 FTOQ9C0B1 505 aaKnown RBP eCLIP14.96□□□□□ -0.01
LINC00540-203ENST00000631321 MYH15Q9Y2K3 1946 aa14.96□□□□□ -0.02
LINC00540-203ENST00000631321 WDR19Q8NEZ3 1342 aa14.96□□□□□ -0.02
LINC00540-203ENST00000631321 FAM160A1Q05DH4 1040 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 STX1AQ16623 288 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 IMMTQ16891 758 aaKnown RBP14.95□□□□□ -0.02
LINC00540-203ENST00000631321 CCDC73Q6ZRK6 1079 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 CCDC186Q7Z3E2 898 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 MB21D2Q8IYB1 491 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-203ENST00000631321 ZBTB38Q8NAP3 1195 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-203ENST00000631321 RGS22Q8NE09 1264 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 TEX13AQ9BXU3 409 aaPredicted RBP14.95□□□□□ -0.02
LINC00540-203ENST00000631321 RTEL1Q9NZ71 1219 aa14.95□□□□□ -0.02
LINC00540-203ENST00000631321 CEBPZQ03701 1054 aaKnown RBP14.95□□□□□ -0.02
LINC00540-203ENST00000631321 FGAP02671 866 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 GORABQ5T7V8 394 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 CHST3Q7LGC8 479 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 CDHR2Q9BYE9 1310 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 A0A1W2PQ27 194 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 A0A1W2PQ64 194 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 A0A1W2PQD8 194 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 FOSBP53539 338 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 SCARF1Q14162 830 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 RIC1Q4ADV7 1423 aa14.94□□□□□ -0.02
LINC00540-203ENST00000631321 NWD2Q9ULI1 1742 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 ZAP70P43403 619 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 IFIT5Q13325 482 aaKnown RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 WASHC4Q2M389 1173 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms