RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 CCDC50Q8IVM0 306 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 CCDC63Q8NA47 563 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 WDR7Q9Y4E6 1490 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 LMBR1LQ6UX01 489 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 PRDM10Q9NQV6 1147 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 RBM8AQ9Y5S9 174 aaKnown RBP13.35□□□□□ -0.27
SHPRH-211ENST00000629427 PAG1Q9NWQ8 432 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 RASAL2Q9UJF2 1139 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 CEP83Q9Y592 693 aa13.35□□□□□ -0.27
SHPRH-211ENST00000629427 APBB1IPQ7Z5R6 666 aaPredicted RBP13.34□□□□□ -0.27
SHPRH-211ENST00000629427 MXRA7P84157 204 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 CHST3Q7LGC8 479 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 TCEANC2Q96MN5 208 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 GJA3Q9Y6H8 435 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 PSMA7O14818 248 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 BMP2KLQ5H9B9 411 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 MIGA1Q8NAN2 632 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 KRT2P35908 639 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 CABLES1Q8TDN4 633 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 RNF216Q9NWF9 866 aaPredicted RBP13.34□□□□□ -0.27
SHPRH-211ENST00000629427 NDC80O14777 642 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 MEIS3Q99687 375 aa13.34□□□□□ -0.27
SHPRH-211ENST00000629427 ZSCAN22P10073 491 aaPredicted RBP13.33□□□□□ -0.27
SHPRH-211ENST00000629427 MCM7P33993 719 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 NFATC2IPQ8NCF5 419 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 DHX58Q96C10 678 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 SDSP20132 328 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 ANO6Q4KMQ2 910 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 NBPF14Q5TI25 921 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 PPIP5K1Q6PFW1 1433 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 PLCG2P16885 1265 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 TNRQ92752 1358 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 LAMC3Q9Y6N6 1575 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 LDHBP07195 334 aaKnown RBP13.33□□□□□ -0.28
SHPRH-211ENST00000629427 IL15P40933 162 aaPredicted RBP13.33□□□□□ -0.28
SHPRH-211ENST00000629427 ODF2LQ9ULJ1 636 aa13.33□□□□□ -0.28
SHPRH-211ENST00000629427 PRPHP41219 470 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 PLCB3Q01970 1234 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 KIF4AO95239 1232 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 AKAP4Q5JQC9 854 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 HELBQ8NG08 1087 aaPredicted RBP13.32□□□□□ -0.28
SHPRH-211ENST00000629427 DHX29Q7Z478 1369 aaKnown RBP13.32□□□□□ -0.28
SHPRH-211ENST00000629427 BACH1O14867 736 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 GNAT2P19087 354 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 CALML3P27482 149 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 RAB3GAP1Q15042 981 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 CNPY2Q9Y2B0 182 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 TNNI2P48788 182 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 TMX3Q96JJ7 454 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 RTL9Q8NET4 1388 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 C11orf95C9JLR9 678 aaPredicted RBP13.32□□□□□ -0.28
SHPRH-211ENST00000629427 PRXQ9BXM0 1461 aa13.32□□□□□ -0.28
SHPRH-211ENST00000629427 IL2RBP14784 551 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 MAK16Q9BXY0 300 aaKnown RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 PSMC4P43686 418 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 NUCB1Q02818 461 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 FBF1Q8TES7 1133 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 RRP9O43818 475 aaKnown RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 HCLS1P14317 486 aaPredicted RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 SAP30BPQ9UHR5 308 aaKnown RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 ANKRD36BQ8N2N9 1353 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 IRS4O14654 1257 aaPredicted RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 ATP2C2O75185 946 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 KRT79Q5XKE5 535 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 TXNDC16Q9P2K2 825 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 PA2G4Q9UQ80 394 aaKnown RBP13.31□□□□□ -0.28
SHPRH-211ENST00000629427 HMGXB3Q12766 1538 aa13.31□□□□□ -0.28
SHPRH-211ENST00000629427 KSR2Q6VAB6 950 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 DTHD1Q6ZMT9 781 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 ZSCAN23Q3MJ62 389 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 LRRC59Q96AG4 307 aaKnown RBP13.3□□□□□ -0.28
SHPRH-211ENST00000629427 SH3BP5O60239 455 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 HS2ST1Q7LGA3 356 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 CCDC117Q8IWD4 279 aaPredicted RBP13.3□□□□□ -0.28
SHPRH-211ENST00000629427 PICK1Q9NRD5 415 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 SPATA24Q86W54 205 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 NEK11Q8NG66 645 aa13.3□□□□□ -0.28
SHPRH-211ENST00000629427 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.3□□□□□ -0.28
SHPRH-211ENST00000629427 C14orf93Q9H972 538 aaKnown RBP13.3□□□□□ -0.28
SHPRH-211ENST00000629427 TRIM75PA6NK02 468 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 CAVIN2O95810 425 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 GTF2F1P35269 517 aaKnown RBP eCLIP13.29□□□□□ -0.28
SHPRH-211ENST00000629427 PLIN2Q99541 437 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 ZNF408Q9H9D4 720 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 PROCA1Q8NCQ7 364 aaPredicted RBP13.29□□□□□ -0.28
SHPRH-211ENST00000629427 MSANTD4Q8NCY6 345 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 RBM17Q96I25 401 aaKnown RBP13.29□□□□□ -0.28
SHPRH-211ENST00000629427 EYA3Q99504 573 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 IL16Q14005 1332 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 ATP2A1O14983 1001 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 IGHDP01880 384 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 AOPEPQ8N6M6 819 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 TRERF1Q96PN7 1200 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 KDM5BQ9UGL1 1544 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 SNX16P57768 344 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 ZFP91Q96JP5 570 aaPredicted RBP13.29□□□□□ -0.28
SHPRH-211ENST00000629427 PKD2L1Q9P0L9 805 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 CTAGE9A4FU28 777 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 UBXN1Q04323 297 aa13.29□□□□□ -0.28
SHPRH-211ENST00000629427 PAXBP1Q9Y5B6 917 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms