RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SEC31BQ9NQW1 1179 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 KANSL3Q9P2N6 904 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 DDX3YO15523 660 aaKnown RBP6.47□□□□□ -1.37
SCN1A-208ENST00000625916 SART1O43290 800 aaKnown RBP6.47□□□□□ -1.37
SCN1A-208ENST00000625916 NFIAQ12857 509 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 LCE3BQ5TA77 95 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 ADAMTSL4Q6UY14 1074 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 KIAA1211Q6ZU35 1233 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 CEP120Q8N960 986 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 UBASH3BQ8TF42 649 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 NUDT16Q96DE0 195 aaKnown RBP6.47□□□□□ -1.37
SCN1A-208ENST00000625916 KLHDC7BQ96G42 594 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 POP1Q99575 1024 aaKnown RBP6.47□□□□□ -1.37
SCN1A-208ENST00000625916 C7orf69Q9H7B7 122 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 TMEM63CQ9P1W3 806 aa6.47□□□□□ -1.37
SCN1A-208ENST00000625916 MED26O95402 600 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 GRIK1P39086 918 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 IRAK1P51617 712 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 SRPK2P78362 688 aaKnown RBP6.46□□□□□ -1.38
SCN1A-208ENST00000625916 ZDHHC13Q8IUH4 622 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 TRIM42Q8IWZ5 723 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 TTC16Q8NEE8 873 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 FOXD4L4Q8WXT5 416 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-208ENST00000625916 FAM46AQ96IP4 442 aaKnown RBP6.46□□□□□ -1.38
SCN1A-208ENST00000625916 MYRFLQ96LU7 910 aa6.46□□□□□ -1.38
SCN1A-208ENST00000625916 HMX2A2RU54 273 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 H3BRJ5 948 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 TM4SF5O14894 197 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 PAX4O43316 350 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 ADAM11O75078 769 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 RPLP1P05386 114 aaKnown RBP6.45□□□□□ -1.38
SCN1A-208ENST00000625916 PCSK2P16519 638 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 CES1P23141 567 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 ATP2B4P23634 1241 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 PIP4K2BP78356 416 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 RNF43Q68DV7 783 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 ATCAYQ86WG3 371 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 ADAM19Q9H013 955 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 KCNF1Q9H3M0 494 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 CNTN3Q9P232 1028 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 SEPT3Q9UH03 358 aa6.45□□□□□ -1.38
SCN1A-208ENST00000625916 COL17A1Q9UMD9 1497 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-208ENST00000625916 KIAA1324LA8MWY0 1029 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-208ENST00000625916 NLRP12P59046 1061 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 ANKRD34AQ69YU3 496 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 INTS5Q6P9B9 1019 aaKnown RBP6.44□□□□□ -1.38
SCN1A-208ENST00000625916 SLC7A3Q8WY07 619 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 EDEM1Q92611 657 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 WNT8BQ93098 351 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 DBNDD2Q9BQY9 259 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 GOLGA2P5Q9HBQ8 144 aa6.44□□□□□ -1.38
SCN1A-208ENST00000625916 BMP3P12645 472 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 ACPPP15309 386 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 GP2P55259 537 aaKnown RBP6.43□□□□□ -1.38
SCN1A-208ENST00000625916 DNM1Q05193 864 aaKnown RBP6.43□□□□□ -1.38
SCN1A-208ENST00000625916 C8orf34Q49A92 452 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 FDX2Q6P4F2 183 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 BEND4Q6ZU67 534 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 CLEC10AQ8IUN9 316 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 FAM20CQ8IXL6 584 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 C1orf127Q8N9H9 656 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 PBXIP1Q96AQ6 731 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 RUSC1Q9BVN2 902 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 RNF208Q9H0X6 261 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 OSGEPQ9NPF4 335 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 SALL4Q9UJQ4 1053 aa6.43□□□□□ -1.38
SCN1A-208ENST00000625916 OAS3Q9Y6K5 1087 aaKnown RBP6.43□□□□□ -1.38
SCN1A-208ENST00000625916 PDE2AO00408 941 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-208ENST00000625916 PREPP48147 710 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 ARL4DP49703 201 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-208ENST00000625916 CCDC97Q96F63 343 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-208ENST00000625916 FAM83CQ9BQN1 747 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 ZMYND15Q9H091 742 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 DZANK1Q9NVP4 752 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 SLAIN2Q9P270 581 aa6.42□□□□□ -1.38
SCN1A-208ENST00000625916 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-208ENST00000625916 GAS2O43903 313 aaKnown RBP6.41□□□□□ -1.38
SCN1A-208ENST00000625916 TRPA1O75762 1119 aa6.41□□□□□ -1.38
SCN1A-208ENST00000625916 NOM1Q5C9Z4 860 aaKnown RBP6.41□□□□□ -1.38
SCN1A-208ENST00000625916 XKR5Q6UX68 686 aa6.41□□□□□ -1.38
SCN1A-208ENST00000625916 SHKBP1Q8TBC3 707 aa6.41□□□□□ -1.38
SCN1A-208ENST00000625916 HELQQ8TDG4 1101 aa6.41□□□□□ -1.38
SCN1A-208ENST00000625916 PMEPA1Q969W9 287 aa6.41□□□□□ -1.38
SCN1A-208ENST00000625916 A6NHS1 94 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 NFKBIEO00221 500 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 TXKP42681 527 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 C19orf57Q0VDD7 668 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 HHIPQ96QV1 700 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 GGNBP2Q9H3C7 697 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 HIF3AQ9Y2N7 669 aa6.4□□□□□ -1.38
SCN1A-208ENST00000625916 PRR19A6NJB7 356 aa6.39□□□□□ -1.39
SCN1A-208ENST00000625916 PDGFAP04085 211 aa6.39□□□□□ -1.39
SCN1A-208ENST00000625916 TAL1P17542 331 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-208ENST00000625916 SPINK2P20155 84 aa6.39□□□□□ -1.39
SCN1A-208ENST00000625916 BTBD11A6QL63 1104 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 WDR64B1ANS9 1081 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 WNT11O96014 354 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 MPSTP25325 297 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 MZF1P28698 734 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms