RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 TTC41PQ6P2S7 1318 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 PRPF40AO75400 957 aaKnown RBP12.6□□□□□ -0.39
VPS11-208ENST00000621676 ATP5JP18859 108 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 DOK7Q18PE1 504 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 SPATA31A6Q5VVP1 1343 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 ZNF532Q9HCE3 1301 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 SLC27A2O14975 620 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 SERPINB2P05120 415 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 CYP21A2P08686 494 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 CTDSPL2Q05D32 466 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 OTUD7BQ6GQQ9 843 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 NKX2-3Q8TAU0 364 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 RPGRQ92834 1020 aaKnown RBP12.59□□□□□ -0.39
VPS11-208ENST00000621676 HMG20BQ9P0W2 317 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 ISY1Q9ULR0 285 aaKnown RBP12.59□□□□□ -0.39
VPS11-208ENST00000621676 G3V3G9 751 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 CHRNA5P30532 468 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 MCMDC2Q4G0Z9 681 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 DCAF8Q5TAQ9 597 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 MPNDQ8N594 471 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 KBTBD3Q8NAB2 608 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 AIDAQ96BJ3 306 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 ATF5Q9Y2D1 282 aaPredicted RBP12.59□□□□□ -0.39
VPS11-208ENST00000621676 DISP2A7MBM2 1401 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 MMP10P09238 476 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 DYNLL1P63167 89 aaKnown RBP12.59□□□□□ -0.39
VPS11-208ENST00000621676 APOBRQ0VD83 1088 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 BLOC1S2Q6QNY1 142 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 SAMD1Q6SPF0 538 aaPredicted RBP12.59□□□□□ -0.39
VPS11-208ENST00000621676 CHMP5Q9NZZ3 219 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 AKAP2Q9Y2D5 859 aa12.59□□□□□ -0.39
VPS11-208ENST00000621676 KCPQ6ZWJ8 1503 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 LMO7Q8WWI1 1683 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 ERBB4Q15303 1308 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 hCG_1642624A0A1W2PR95 340 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 DIXDC1Q155Q3 683 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 HAUS7Q99871 368 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 CYP46A1Q9Y6A2 500 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 GPAA1O43292 621 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 ZBTB7AO95365 584 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 CSF1RP07333 972 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 MINPP1Q9UNW1 487 aa12.58□□□□□ -0.4
VPS11-208ENST00000621676 JAK2O60674 1132 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 MBD4O95243 580 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 SLC5A1P13866 664 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 PRDX5P30044 214 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 RUFY3Q7L099 469 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 NARFQ9UHQ1 456 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 ERVV-1B6SEH8 477 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 HSPD1P10809 573 aaKnown RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 CYP7A1P22680 504 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 HSPA4P34932 840 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 COL23A1Q86Y22 540 aaPredicted RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 TFIP11Q9UBB9 837 aaKnown RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 MAST3O60307 1309 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 SLIT2O94813 1529 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 PSDA5PKW4 1024 aaPredicted RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 FIBPO43427 364 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 SPATA5Q8NB90 893 aa12.57□□□□□ -0.4
VPS11-208ENST00000621676 CDC5LQ99459 802 aaKnown RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 AATFQ9NY61 560 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS11-208ENST00000621676 RBM27Q9P2N5 1060 aaKnown RBP12.57□□□□□ -0.4
VPS11-208ENST00000621676 RAD50Q92878 1312 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 FGAP02671 866 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 ATP2B1P20020 1258 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 Q6ZUG5 572 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 AK9Q5TCS8 1911 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 RNF113AO15541 343 aaKnown RBP12.56□□□□□ -0.4
VPS11-208ENST00000621676 TDO2P48775 406 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 PUM3Q15397 648 aaKnown RBP12.56□□□□□ -0.4
VPS11-208ENST00000621676 ME3Q16798 604 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 STOX1Q6ZVD7 989 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 TPCN1Q9ULQ1 816 aa12.56□□□□□ -0.4
VPS11-208ENST00000621676 GYS1P13807 737 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 RBM6P78332 1123 aaKnown RBP12.55□□□□□ -0.4
VPS11-208ENST00000621676 ANO8Q9HCE9 1232 aaPredicted RBP12.55□□□□□ -0.4
VPS11-208ENST00000621676 B4E1Z4 1266 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 GRIK5Q16478 980 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 PRR5LQ6MZQ0 368 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 SMC3Q9UQE7 1217 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 MRC1P22897 1456 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 UBE2Q2LH0YL09 131 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 UFL1O94874 794 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 TRIM28Q13263 835 aaKnown RBP12.55□□□□□ -0.4
VPS11-208ENST00000621676 KCNQ5Q9NR82 932 aa12.55□□□□□ -0.4
VPS11-208ENST00000621676 SCN11AQ9UI33 1791 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 ZNF609O15014 1411 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 PARP10Q53GL7 1025 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 CAVIN4Q5BKX8 364 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 ADGRA1Q86SQ6 560 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 NUP133Q8WUM0 1156 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 LPIN2Q92539 896 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 SAP30BPQ9UHR5 308 aaKnown RBP12.54□□□□□ -0.4
VPS11-208ENST00000621676 DDX49Q9Y6V7 483 aaKnown RBP12.54□□□□□ -0.4
VPS11-208ENST00000621676 BAZ2BQ9UIF8 2168 aaKnown RBP12.54□□□□□ -0.4
VPS11-208ENST00000621676 SCNN1DP51172 638 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 DDR1Q08345 913 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 NEK1Q96PY6 1258 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 SENP2Q9HC62 589 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 RGS17Q9UGC6 210 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms