RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CTTNBP2NLQ9P2B4 639 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 UBASH3AP57075 661 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 CFDP1Q9UEE9 299 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-213ENST00000613099 GRIN2AQ12879 1464 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 COG7P83436 770 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 LAMB3Q13751 1172 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 ERCC6LQ2NKX8 1250 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 KDM5AP29375 1690 aaKnown RBP5.6□□□□□ -1.51
VPS13D-213ENST00000613099 CORO7P57737 925 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 TBC1D9Q6ZT07 1266 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 CTIFO43310 598 aaKnown RBP5.6□□□□□ -1.51
VPS13D-213ENST00000613099 C20orf194Q5TEA3 1177 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 ZSCAN22P10073 491 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-213ENST00000613099 ADCY2Q08462 1091 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 HLTFQ14527 1009 aaKnown RBP eCLIP5.6□□□□□ -1.512e-6■■■■□ 24.2
VPS13D-213ENST00000613099 CCDC110Q8TBZ0 833 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 HOMER3Q9NSC5 361 aa5.6□□□□□ -1.51
VPS13D-213ENST00000613099 SWT1Q5T5J6 900 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 RRP36Q96EU6 259 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 SLC3A2P08195 630 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 RFC1P35251 1148 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 NOP53Q9NZM5 478 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 FAF1Q9UNN5 650 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 SKIP12755 728 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 TRIM68Q6AZZ1 485 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 FAM114A2Q9NRY5 505 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 PKD2Q13563 968 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 RNF217Q8TC41 542 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 Q9H521 79 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 FBXO41Q8TF61 875 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 FAM212AQ96EL1 285 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ANKRD27Q96NW4 1050 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 CTAGE1Q96RT6 745 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ITSN1Q15811 1721 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 RAD54L2Q9Y4B4 1467 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 TDRD9Q8NDG6 1382 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 E2F6O75461 281 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 VIMP08670 466 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 IFIT2P09913 472 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ICA1Q05084 483 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ATL3Q6DD88 541 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ARHGAP24Q8N264 748 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 MSL3Q8N5Y2 521 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC151A5D8V7 595 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 IFT20Q8IY31 132 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 BAG1Q99933 345 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 KLC4Q9NSK0 619 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 HNRNPMP52272 730 aaKnown RBP eCLIP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 MUM1Q2TAK8 710 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 ZC3H6P61129 1189 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 IFI16Q16666 785 aaKnown RBP5.59□□□□□ -1.51
VPS13D-213ENST00000613099 SLC44A4Q53GD3 710 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 JADE2Q9NQC1 790 aa5.59□□□□□ -1.51
VPS13D-213ENST00000613099 STAMBPO95630 424 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC96Q2M329 555 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 ALS2CLQ60I27 953 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 MAFGO15525 162 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 BCAR3O75815 825 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 CDC25BP30305 580 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 ARHGEF12Q9NZN5 1544 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 CEP152O94986 1710 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 BLVRAP53004 296 aa5.59□□□□□ -1.52
VPS13D-213ENST00000613099 ETF1P62495 437 aaKnown RBP5.59□□□□□ -1.52
VPS13D-213ENST00000613099 FAN1Q9Y2M0 1017 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 GNGT1P63211 74 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 SEMA3FQ13275 785 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 ATF7IPQ6VMQ6 1270 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 PCYT1AP49585 367 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 IFT88Q13099 833 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 FBXO38Q6PIJ6 1188 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 SEPT11Q9NVA2 429 aaKnown RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 FAM169AQ9Y6X4 670 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 ABCC2Q92887 1545 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 UNC45AQ9H3U1 944 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 PTPN23Q9H3S7 1636 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 KRT83P78385 493 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 NAIF1Q69YI7 327 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 NAPGQ99747 312 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 EPS15P42566 896 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 ZSCAN16Q9H4T2 348 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 RAPGEF6Q8TEU7 1601 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 RUSC2Q8N2Y8 1516 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 PTPRCP08575 1304 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 TPP2P29144 1249 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 PARP9Q8IXQ6 854 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 LRRIQ1Q96JM4 1722 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 DUSP27Q5VZP5 1158 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 TUBA8Q9NY65 449 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 PSDA5PKW4 1024 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 POLE2P56282 527 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 CEBPZQ03701 1054 aaKnown RBP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 HOOK3Q86VS8 718 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 KLHDC4Q8TBB5 520 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 TSGA10Q9BZW7 698 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS13D-213ENST00000613099 MTUS1Q9ULD2 1270 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 RHOXF2BP0C7M4 288 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 RHOXF2Q9BQY4 288 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 LRPPRCP42704 1394 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms