RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SHTN1A0MZ66 631 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 H7C1D1 291 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 HAND2P61296 217 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 NCKAP5LQ9HCH0 1330 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 RAB3IL1Q8TBN0 382 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 WDR66Q8TBY9 1149 aa23.27■■□□□ 1.32
UPF1-207ENST00000599848 PTPN14Q15678 1187 aa23.27■■□□□ 1.32
UPF1-207ENST00000599848 BACH2Q9BYV9 841 aa23.27■■□□□ 1.32
UPF1-207ENST00000599848 SPECC1Q5M775 1068 aa23.27■■□□□ 1.32
UPF1-207ENST00000599848 CDAN1Q8IWY9 1227 aa23.27■■□□□ 1.32
UPF1-207ENST00000599848 KIF18AQ8NI77 898 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 MAP3K5Q99683 1374 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 GPR162Q16538 588 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 SH3TC1Q8TE82 1336 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 RIMBP2O15034 1052 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 UFL1O94874 794 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 OTUD7BQ6GQQ9 843 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 RASAL2Q9UJF2 1139 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 TTC41PQ6P2S7 1318 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 CYLC1P35663 651 aaPredicted RBP23.26■■□□□ 1.31
UPF1-207ENST00000599848 IP6K1Q92551 441 aa23.26■■□□□ 1.31
UPF1-207ENST00000599848 ZBED4O75132 1171 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 USP48Q86UV5 1035 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 PPP1R14CQ8TAE6 165 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 CCDC77Q9BR77 488 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 ALG1Q9BT22 464 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 BICDL2A1A5D9 508 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 AKR1B10O60218 316 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 RPL13P26373 211 aaKnown RBP23.25■■□□□ 1.31
UPF1-207ENST00000599848 BMP2KLQ5H9B9 411 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 DPP8Q6V1X1 898 aaPredicted RBP23.25■■□□□ 1.31
UPF1-207ENST00000599848 TBC1D22AQ8WUA7 517 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 GOLGA1Q92805 767 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 GAS8O95995 478 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 HSPA2P54652 639 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 PLCD3Q8N3E9 789 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 TMCO3Q6UWJ1 677 aa23.25■■□□□ 1.31
UPF1-207ENST00000599848 GABPB2Q8TAK5 448 aaPredicted RBP23.25■■□□□ 1.31
UPF1-207ENST00000599848 TEX11Q8IYF3 940 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 NDC80O14777 642 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 YTHDC2Q9H6S0 1430 aaKnown RBP23.24■■□□□ 1.31
UPF1-207ENST00000599848 AS3MTQ9HBK9 375 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 ZFYVE9O95405 1425 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 TRIM75PA6NK02 468 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 PARP1P09874 1014 aaKnown RBP23.24■■□□□ 1.31
UPF1-207ENST00000599848 SELENOOQ9BVL4 669 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 PAG1Q9NWQ8 432 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 USP21Q9UK80 565 aa23.24■■□□□ 1.31
UPF1-207ENST00000599848 RNF113AO15541 343 aaKnown RBP23.23■■□□□ 1.31
UPF1-207ENST00000599848 PCF11O94913 1555 aaKnown RBP23.23■■□□□ 1.31
UPF1-207ENST00000599848 PRPF4BQ13523 1007 aaKnown RBP23.23■■□□□ 1.31
UPF1-207ENST00000599848 CAMK4Q16566 473 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 CCDC144CPQ8IYA2 1237 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 SMTNP53814 917 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 CKAP4Q07065 602 aaKnown RBP23.23■■□□□ 1.31
UPF1-207ENST00000599848 ZNF408Q9H9D4 720 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 C6orf163Q5TEZ5 329 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 GRPEL1Q9HAV7 217 aa23.23■■□□□ 1.31
UPF1-207ENST00000599848 MICALCLQ6ZW33 695 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 N4BP3O15049 544 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 OTUD6BQ8N6M0 293 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 IQCGQ9H095 443 aaKnown RBP23.22■■□□□ 1.31
UPF1-207ENST00000599848 GJB2P29033 226 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 HIBADHP31937 336 aaKnown RBP23.22■■□□□ 1.31
UPF1-207ENST00000599848 MCM4P33991 863 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 ASIC1P78348 528 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 EXOC7Q9UPT5 735 aa23.22■■□□□ 1.31
UPF1-207ENST00000599848 TRIM27P14373 513 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 MRVI1Q9Y6F6 885 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 RAD50Q92878 1312 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 SYKP43405 635 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 CCDC155Q8N6L0 562 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 NPATQ14207 1427 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 NOP56O00567 594 aaKnown RBP23.21■■□□□ 1.31
UPF1-207ENST00000599848 SLC39A6Q13433 755 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 HLTFQ14527 1009 aaKnown RBP eCLIP23.21■■□□□ 1.31
UPF1-207ENST00000599848 RRAGBQ5VZM2 374 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 CSADQ9Y600 493 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 CCDC175P0C221 793 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 ATP8B2P98198 1209 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 IFT74Q96LB3 600 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 PSMD1Q99460 953 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 PLCD4Q9BRC7 762 aa23.21■■□□□ 1.31
UPF1-207ENST00000599848 APBA3O96018 575 aa23.2■■□□□ 1.31
UPF1-207ENST00000599848 WDR70Q9NW82 654 aa23.2■■□□□ 1.3
UPF1-207ENST00000599848 ZMYM3Q14202 1370 aa23.2■■□□□ 1.3
UPF1-207ENST00000599848 NFATC2IPQ8NCF5 419 aa23.2■■□□□ 1.3
UPF1-207ENST00000599848 TNNT1P13805 278 aa23.2■■□□□ 1.3
UPF1-207ENST00000599848 IRX3P78415 501 aaPredicted RBP23.2■■□□□ 1.3
UPF1-207ENST00000599848 SPECC1LQ69YQ0 1117 aa23.2■■□□□ 1.3
UPF1-207ENST00000599848 KRT2P35908 639 aa23.19■■□□□ 1.3
UPF1-207ENST00000599848 DNM2P50570 870 aa23.19■■□□□ 1.3
UPF1-207ENST00000599848 IQSEC3Q9UPP2 1182 aaPredicted RBP23.19■■□□□ 1.3
UPF1-207ENST00000599848 DCAF15Q66K64 600 aa23.19■■□□□ 1.3
UPF1-207ENST00000599848 ZNF772Q68DY9 489 aaPredicted RBP23.19■■□□□ 1.3
UPF1-207ENST00000599848 TTC22Q5TAA0 569 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 HOXB7P09629 217 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 SLC4A8Q2Y0W8 1093 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 AZI2Q9H6S1 392 aa23.18■■□□□ 1.3
UPF1-207ENST00000599848 BRF1Q92994 677 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms