RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CUL9Q8IWT3 2517 aa18.04■□□□□ 0.48
SHKBP1-218ENST00000598907 CRHR2Q13324 411 aa18.04■□□□□ 0.48
SHKBP1-218ENST00000598907 FBXW7Q969H0 707 aa18.04■□□□□ 0.48
SHKBP1-218ENST00000598907 GGA1Q9UJY5 639 aa18.04■□□□□ 0.48
SHKBP1-218ENST00000598907 CAP1Q01518 475 aa18.03■□□□□ 0.48
SHKBP1-218ENST00000598907 SLC9C1Q4G0N8 1177 aa18.03■□□□□ 0.48
SHKBP1-218ENST00000598907 FAM9BQ8IZU0 186 aa18.03■□□□□ 0.48
SHKBP1-218ENST00000598907 MXD3Q9BW11 206 aa18.03■□□□□ 0.48
SHKBP1-218ENST00000598907 USP17L3A6NCW0 530 aa18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 USP17L4A6NCW7 530 aa18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 RPS8P62241 208 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 SF3B3Q15393 1217 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 USP17L1Q7RTZ2 530 aa18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 TSPYL4Q9UJ04 414 aa18.02■□□□□ 0.48
SHKBP1-218ENST00000598907 WNT10BO00744 389 aa18.01■□□□□ 0.47
SHKBP1-218ENST00000598907 LDLRAD1Q5T700 205 aa18.01■□□□□ 0.47
SHKBP1-218ENST00000598907 CLMNQ96JQ2 1002 aa18.01■□□□□ 0.47
SHKBP1-218ENST00000598907 PODXL2Q9NZ53 605 aa18.01■□□□□ 0.47
SHKBP1-218ENST00000598907 PTCH2Q9Y6C5 1203 aa18.01■□□□□ 0.47
SHKBP1-218ENST00000598907 ATP5J2-PTCD1G3V325 749 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 NEFMP07197 916 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 SP3Q02447 781 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 SLC10A4Q96EP9 437 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 WNK4Q96J92 1243 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 SEC31BQ9NQW1 1179 aa18■□□□□ 0.47
SHKBP1-218ENST00000598907 INHBEP58166 350 aa17.99■□□□□ 0.47
SHKBP1-218ENST00000598907 OGFOD1Q8N543 542 aa17.99■□□□□ 0.47
SHKBP1-218ENST00000598907 DPF3Q92784 378 aa17.99■□□□□ 0.47
SHKBP1-218ENST00000598907 PLEKHF1Q96S99 279 aa17.99■□□□□ 0.47
SHKBP1-218ENST00000598907 LAMB1P07942 1786 aa17.99■□□□□ 0.47
SHKBP1-218ENST00000598907 ZBTB48P10074 688 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-218ENST00000598907 APOBEC3FQ8IUX4 373 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-218ENST00000598907 RANBP2P49792 3224 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-218ENST00000598907 ZNF646O15015 1829 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-218ENST00000598907 SSC5DA1L4H1 1573 aa17.97■□□□□ 0.47
SHKBP1-218ENST00000598907 IRS4O14654 1257 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-218ENST00000598907 NBPF11Q86T75 865 aa17.97■□□□□ 0.47
SHKBP1-218ENST00000598907 SH3TC2Q8TF17 1288 aa17.97■□□□□ 0.47
SHKBP1-218ENST00000598907 CCDC85AQ96PX6 553 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-218ENST00000598907 PNNQ9H307 717 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-218ENST00000598907 ZSWIM8A7E2V4 1837 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 COL6A3P12111 3177 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 WTIPA6NIX2 430 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 NFE2L2Q16236 605 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 OTUD7BQ6GQQ9 843 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 PODNQ7Z5L7 613 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 RUNDC1Q96C34 613 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 XDHP47989 1333 aa17.95■□□□□ 0.46
SHKBP1-218ENST00000598907 DACT2Q5SW24 774 aa17.94■□□□□ 0.46
SHKBP1-218ENST00000598907 A0A0C4DFX4 3053 aa17.94■□□□□ 0.46
SHKBP1-218ENST00000598907 GJA5P36382 358 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 MNX1P50219 401 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 KIAA0825Q8IV33 1275 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 CCDC146Q8IYE0 955 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 PTPN18Q99952 460 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 ISCA1Q9BUE6 129 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 CHPF2Q9P2E5 772 aa17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 COL1A1P02452 1464 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-218ENST00000598907 SOX1O00570 391 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 PLBD2Q8NHP8 589 aa17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 LRCH3Q96II8 777 aa17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 DEFB129Q9H1M3 183 aa17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 SPEF2Q9C093 1822 aa17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 MYO3BQ8WXR4 1341 aa17.92■□□□□ 0.46
SHKBP1-218ENST00000598907 PPP1R12BO60237 982 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-218ENST00000598907 ECM2O94769 699 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-218ENST00000598907 SHISA4Q96DD7 197 aa17.91■□□□□ 0.46
SHKBP1-218ENST00000598907 OTOFQ9HC10 1997 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 ATP2B4P23634 1241 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 ARHGEF6Q15052 776 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 KRT24Q2M2I5 525 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 MAPK8IP3Q9UPT6 1336 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 MED23Q9ULK4 1368 aa17.9■□□□□ 0.46
SHKBP1-218ENST00000598907 TAF1CQ15572 869 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 MAP3K11Q16584 847 aa17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 CCDC152Q4G0S7 254 aa17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 NCBP3Q53F19 620 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 ANKRD13DQ6ZTN6 518 aa17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 PRO3102Q9H379 93 aa17.89■□□□□ 0.45
SHKBP1-218ENST00000598907 APAF1O14727 1248 aa17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 STRIP1Q5VSL9 837 aa17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 ANKRD18AQ8IVF6 992 aa17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 JARID2Q92833 1246 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 ARHGAP39Q9C0H5 1083 aa17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 ELP3Q9H9T3 547 aa17.88■□□□□ 0.45
SHKBP1-218ENST00000598907 MTFR1Q15390 333 aa17.87■□□□□ 0.45
SHKBP1-218ENST00000598907 OPTNQ96CV9 577 aa17.87■□□□□ 0.45
SHKBP1-218ENST00000598907 CLRN2A0PK11 232 aa17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 TMPOP42166 694 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 IREB2P48200 963 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 HTATIP2Q9BUP3 242 aa17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 VEZTQ9HBM0 779 aa17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 ZFYVE28Q9HCC9 887 aa17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 PCDHAC2Q9Y5I4 1007 aa17.86■□□□□ 0.45
SHKBP1-218ENST00000598907 TESPA1A2RU30 521 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 DLGAP5Q15398 846 aa17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 NBPF12Q5TAG4 269 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 HDGFL1Q5TGJ6 251 aa17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 ECM29Q5VYK3 1845 aa17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 BRI3BPQ8WY22 251 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms