RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 TAF1CQ15572 869 aaPredicted RBP4.34□□□□□ -1.71
VRK3-204ENST00000593912 LDLRAD1Q5T700 205 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 DPP8Q6V1X1 898 aaPredicted RBP4.34□□□□□ -1.71
VRK3-204ENST00000593912 TPTE2Q6XPS3 522 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 NECAB2Q7Z6G3 386 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 PIP4P2Q8N4L2 257 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 FBXL18Q96ME1 805 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 DEFB118Q96PH6 123 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 RTFDC1Q9BY42 306 aaPredicted RBP4.34□□□□□ -1.71
VRK3-204ENST00000593912 LGR6Q9HBX8 967 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 NIP7Q9Y221 180 aaKnown RBP eCLIP4.34□□□□□ -1.71
VRK3-204ENST00000593912 KIF7Q2M1P5 1343 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 DDX60Q8IY21 1712 aaKnown RBP4.34□□□□□ -1.71
VRK3-204ENST00000593912 OTOFQ9HC10 1997 aa4.34□□□□□ -1.71
VRK3-204ENST00000593912 ATRXP46100 2492 aa4.34□□□□□ -1.72
VRK3-204ENST00000593912 CHD6Q8TD26 2715 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 ST18O60284 1047 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 STARD3NLO95772 234 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 ZBTB48P10074 688 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 GTF2E1P29083 439 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 HOXA10P31260 410 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 NF2P35240 595 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 IL6STP40189 918 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 TFF2Q03403 129 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 CCDC85BQ15834 202 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 MAP3K11Q16584 847 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 DOK7Q18PE1 504 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 GRIPAP1Q4V328 841 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 PLEKHO1Q53GL0 409 aaPredicted RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 C1orf141Q5JVX7 400 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 OTUD7BQ6GQQ9 843 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 ARMC9Q7Z3E5 817 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 PODNQ7Z5L7 613 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 SUPT20HQ8NEM7 779 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 RAET1EQ8TD07 263 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 ANKS1AQ92625 1134 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 SLC10A4Q96EP9 437 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 VPS33BQ9H267 617 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 SLC52A2Q9HAB3 445 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 RALYQ9UKM9 306 aaKnown RBP4.33□□□□□ -1.72
VRK3-204ENST00000593912 ATP6V0A2Q9Y487 856 aa4.33□□□□□ -1.72
VRK3-204ENST00000593912 LTBP2Q14767 1821 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 FAM205AQ6ZU69 1335 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 MYPNQ86TC9 1320 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 NBPF26B4DH59 902 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 RIMBP2O15034 1052 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 BMP1P13497 986 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 OSBPP22059 807 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 RPS12P25398 132 aaKnown RBP4.32□□□□□ -1.72
VRK3-204ENST00000593912 KCNQ1P51787 676 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 UBXN2AP68543 259 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 EIF4A2Q14240 407 aaKnown RBP4.32□□□□□ -1.72
VRK3-204ENST00000593912 KIF22Q14807 665 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 SHHQ15465 462 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 NBPF9Q3BBW0 867 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 C9orf50Q5SZB4 431 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 AEBP1Q8IUX7 1158 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 FAM43AQ8N2R8 423 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 ZBTB38Q8NAP3 1195 aaPredicted RBP4.32□□□□□ -1.72
VRK3-204ENST00000593912 RBM17Q96I25 401 aaKnown RBP4.32□□□□□ -1.72
VRK3-204ENST00000593912 ZNF496Q96IT1 587 aaPredicted RBP4.32□□□□□ -1.72
VRK3-204ENST00000593912 TRIM47Q96LD4 638 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 UIMC1Q96RL1 719 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 CRAMP1Q96RY5 1269 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 ZFYVE28Q9HCC9 887 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 CHD7Q9P2D1 2997 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 SRRDQ9UH36 339 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 MGAMO43451 1857 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 LRRC37A2A6NM11 1700 aa4.32□□□□□ -1.72
VRK3-204ENST00000593912 MYO9BQ13459 2157 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 MYO15AQ9UKN7 3530 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 ABCC4O15439 1325 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 PSME4Q14997 1843 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 TESPA1A2RU30 521 aaPredicted RBP4.31□□□□□ -1.72
VRK3-204ENST00000593912 ECE2O60344 883 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 RGS20O76081 388 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 ELNP15502 786 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 PSMC4P43686 418 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 ZNF280AP59817 542 aaPredicted RBP4.31□□□□□ -1.72
VRK3-204ENST00000593912 PRKCZQ05513 592 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 PDE3AQ14432 1141 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 HLFQ16534 295 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 NPM2Q86SE8 214 aaKnown RBP4.31□□□□□ -1.72
VRK3-204ENST00000593912 VSIG10Q8N0Z9 540 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 BRI3BPQ8WY22 251 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 CRISPLD2Q9H0B8 497 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 TMX4Q9H1E5 349 aaPredicted RBP4.31□□□□□ -1.72
VRK3-204ENST00000593912 MYOZ2Q9NPC6 264 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 GABRQQ9UN88 632 aa4.31□□□□□ -1.72
VRK3-204ENST00000593912 COL3A1P02461 1466 aaPredicted RBP4.3□□□□□ -1.72
VRK3-204ENST00000593912 NUP98P52948 1817 aa4.3□□□□□ -1.72
VRK3-204ENST00000593912 LRRC37AA6NMS7 1700 aa4.3□□□□□ -1.72
VRK3-204ENST00000593912 PFASO15067 1338 aa4.3□□□□□ -1.72
VRK3-204ENST00000593912 RNMTO43148 476 aaKnown RBP4.3□□□□□ -1.72
VRK3-204ENST00000593912 FMNL1O95466 1100 aaPredicted RBP4.3□□□□□ -1.72
VRK3-204ENST00000593912 INHAP05111 366 aa4.3□□□□□ -1.72
VRK3-204ENST00000593912 VIL1P09327 827 aaKnown RBP4.3□□□□□ -1.72
VRK3-204ENST00000593912 PRMT2P55345 433 aa4.3□□□□□ -1.72
VRK3-204ENST00000593912 SMAD3P84022 425 aaKnown RBP4.3□□□□□ -1.72
VRK3-204ENST00000593912 CLEC4GQ6UXB4 293 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms