RNA–Protein interactions for RNA: ENST00000590208.5

MBD1-222, Transcript of methyl-CpG binding domain protein 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 2,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-222	ENST00000590208	FAM177A1	Q8N128	213 aa	Predicted RBP	18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	NFATC2IP	Q8NCF5	419 aa		18.35	■□□□□ 0.53
MBD1-222	ENST00000590208	ALDH1L1	O75891	902 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	NAA16	Q6N069	864 aa	Predicted RBP	18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	TRIM65	Q6PJ69	517 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	MNS1	Q8NEH6	495 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	TNR	Q92752	1358 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	PRAMEF22	A3QJZ6	481 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	ATP1A3	P13637	1013 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	MRPS27	Q92552	414 aa	Known RBP	18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	KIAA1468	Q9P260	1216 aa		18.34	■□□□□ 0.53
MBD1-222	ENST00000590208	JCAD	Q9P266	1359 aa		18.33	■□□□□ 0.53
MBD1-222	ENST00000590208	CCDC34	Q96HJ3	373 aa		18.33	■□□□□ 0.53
MBD1-222	ENST00000590208	ARGLU1	Q9NWB6	273 aa	Predicted RBP	18.33	■□□□□ 0.53
MBD1-222	ENST00000590208	PFKFB2	O60825	505 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	TADA3	O75528	432 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	GYS2	P54840	703 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	ZRSR1	Q15695	479 aa	Known RBP	18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	TEX35	Q5T0J7	233 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	OTUD7B	Q6GQQ9	843 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	KRBA2	Q6ZNG9	492 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	ZNF396	Q96N95	335 aa	Predicted RBP	18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	ZBTB9	Q96C00	473 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	TMX1	Q9H3N1	280 aa		18.33	■□□□□ 0.52
MBD1-222	ENST00000590208	TEF	Q10587	303 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	NCAPH	Q15003	741 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	CHMP4A	Q9BY43	222 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208		A0A0G2JLW4	131 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	OAS2	P29728	719 aa	Known RBP	18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	HSPA2	P54652	639 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	CHST3	Q7LGC8	479 aa		18.32	■□□□□ 0.52
MBD1-222	ENST00000590208	NEDD4	P46934	1319 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	GRM8	O00222	908 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	TBC1D8	O95759	1140 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	TPM4	P67936	248 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	UTP14A	Q9BVJ6	771 aa	Known RBP	18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	NWD1	Q149M9	1564 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	BTBD11	A6QL63	1104 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	EVC	P57679	992 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	AIMP1	Q12904	312 aa	Known RBP	18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	KSR2	Q6VAB6	950 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	DPF2	Q92785	391 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	DBF4	Q9UBU7	674 aa	Predicted RBP	18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	CCDC9	Q9Y3X0	531 aa	Known RBP	18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	PARP3	Q9Y6F1	533 aa		18.31	■□□□□ 0.52
MBD1-222	ENST00000590208	POLR3D	P05423	398 aa	Predicted RBP	18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	LLPH	Q9BRT6	129 aa	Known RBP	18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	CLIC4	Q9Y696	253 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	CEMIP	Q8WUJ3	1361 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	PHLPP2	Q6ZVD8	1323 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	FANCC	Q00597	558 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	MPRIP	Q6WCQ1	1025 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	ZNF609	O15014	1411 aa		18.3	■□□□□ 0.52
MBD1-222	ENST00000590208	ADAL	Q6DHV7	355 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	NRDC	O43847	1150 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	SF3A1	Q15459	793 aa	Known RBP	18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	REXO1L1P	Q8IX06	675 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	UBXN6	Q9BZV1	441 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	LCMT1	Q9UIC8	334 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	DBNL	Q9UJU6	430 aa	Known RBP	18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	KCNJ6	P48051	423 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	SMC1A	Q14683	1233 aa	Known RBP	18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	HSD3B7	Q9H2F3	369 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208		U3KPZ7	1027 aa	Predicted RBP	18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	TOPAZ1	Q8N9V7	1692 aa		18.29	■□□□□ 0.52
MBD1-222	ENST00000590208	EFCAB8	A8MWE9	144 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	TRIM66	O15016	1216 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	SLC3A2	P08195	630 aa	Known RBP	18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	HOXB7	P09629	217 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	CC2D1A	Q6P1N0	951 aa	Predicted RBP	18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	DDX46	Q7L014	1031 aa	Known RBP	18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	ADAMTSL3	P82987	1691 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	MYH15	Q9Y2K3	1946 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	GNL2	Q13823	731 aa	Known RBP	18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	STK38	Q15208	465 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	DHX32	Q7L7V1	743 aa	Known RBP	18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	TXLNB	Q8N3L3	684 aa		18.28	■□□□□ 0.52
MBD1-222	ENST00000590208	LRRFIP1	Q32MZ4	808 aa	Known RBP	18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	EPHA10	Q5JZY3	1008 aa		18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	LINC00301	Q8NCQ3	95 aa		18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	ZFP91	Q96JP5	570 aa	Predicted RBP	18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	GJB4	Q9NTQ9	266 aa		18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	FDPS	P14324	419 aa	Known RBP	18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	SLC26A8	Q96RN1	970 aa		18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	BPIFA3	Q9BQP9	254 aa		18.27	■□□□□ 0.52
MBD1-222	ENST00000590208	ZNF202	O95125	648 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	NLRP12	P59046	1061 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	ZSCAN26	Q16670	478 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	WDR24	Q96S15	920 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	RTEL1	Q9NZ71	1219 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	TMEM232	C9JQI7	657 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	MCMDC2	Q4G0Z9	681 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	CCDC158	Q5M9N0	1113 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	CERS3	Q8IU89	383 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	LINS1	Q8NG48	757 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	SALL1	Q9NSC2	1324 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	TUBB4A	P04350	444 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	UBASH3A	P57075	661 aa		18.26	■□□□□ 0.51
MBD1-222	ENST00000590208	ATL3	Q6DD88	541 aa		18.26	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms