RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 ZSCAN22P10073 491 aaPredicted RBP12.63□□□□□ -0.39
ZNF540-208ENST00000589857 TCIRG1Q13488 830 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 CAVIN1Q6NZI2 390 aaKnown RBP12.63□□□□□ -0.39
ZNF540-208ENST00000589857 NBPF10Q6P3W6 841 aaKnown RBP12.63□□□□□ -0.39
ZNF540-208ENST00000589857 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 NBPF15Q8N660 670 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 IL25Q9H293 177 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 RRAGCQ9HB90 399 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 HELLSQ9NRZ9 838 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 ABCC12Q96J65 1359 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 RPAP1Q9BWH6 1393 aaPredicted RBP12.63□□□□□ -0.39
ZNF540-208ENST00000589857 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 UBR2Q8IWV8 1755 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 STX6O43752 255 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 PCCAP05165 728 aaPredicted RBP12.62□□□□□ -0.39
ZNF540-208ENST00000589857 VEGFAP15692 232 aaPredicted RBP12.62□□□□□ -0.39
ZNF540-208ENST00000589857 NASPP49321 788 aaPredicted RBP12.62□□□□□ -0.39
ZNF540-208ENST00000589857 PRELPP51888 382 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 FOXO4P98177 505 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 PTH1RQ03431 593 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 CCDC57Q2TAC2 916 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 ZSCAN23Q3MJ62 389 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 MCMDC2Q4G0Z9 681 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 USPL1Q5W0Q7 1092 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 DPY19L2Q6NUT2 758 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 KBTBD3Q8NAB2 608 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 PLA2G12BQ9BX93 195 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 TLR7Q9NYK1 1049 aaKnown RBP12.62□□□□□ -0.39
ZNF540-208ENST00000589857 DBNLQ9UJU6 430 aaKnown RBP12.62□□□□□ -0.39
ZNF540-208ENST00000589857 KIF3AQ9Y496 699 aa12.62□□□□□ -0.39
ZNF540-208ENST00000589857 ARFGEF2Q9Y6D5 1785 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 ITGB4P16144 1822 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 ZFYP08048 801 aaPredicted RBP12.61□□□□□ -0.39
ZNF540-208ENST00000589857 HSP90B1P14625 803 aaKnown RBP12.61□□□□□ -0.39
ZNF540-208ENST00000589857 RPS6KB1P23443 525 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 PKP1Q13835 747 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 COL13A1Q5TAT6 717 aaPredicted RBP12.61□□□□□ -0.39
ZNF540-208ENST00000589857 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 FAM227BQ96M60 508 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 CEP126Q9P2H0 1117 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 CDHR2Q9BYE9 1310 aa12.61□□□□□ -0.39
ZNF540-208ENST00000589857 A0A0D9SFI3 127 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 TAF5LO75529 589 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 A1BGP04217 495 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 KCNA3P22001 575 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 TAF7LQ5H9L4 462 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 CCDC158Q5M9N0 1113 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 LRSAM1Q6UWE0 723 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 KLHDC4Q8TBB5 520 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 DNAJC2Q99543 621 aaKnown RBP12.6□□□□□ -0.39
ZNF540-208ENST00000589857 ZBTB3Q9H5J0 574 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 PAG1Q9NWQ8 432 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 AK9Q5TCS8 1911 aa12.6□□□□□ -0.39
ZNF540-208ENST00000589857 TOGARAM1Q9Y4F4 1720 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 CAPN15O75808 1086 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 F13A1P00488 732 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 LMNB1P20700 586 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 CRKLP46109 303 aaKnown RBP12.59□□□□□ -0.39
ZNF540-208ENST00000589857 ZBTB38Q8NAP3 1195 aaPredicted RBP12.59□□□□□ -0.39
ZNF540-208ENST00000589857 FAM184AQ8NB25 1140 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 DBNDD2Q9BQY9 259 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 DSCC1Q9BVC3 393 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 ZNF609O15014 1411 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 MAP3K15Q6ZN16 1313 aa12.59□□□□□ -0.39
ZNF540-208ENST00000589857 KIF13BQ9NQT8 1826 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 GLTPD2A6NH11 291 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 SYT1P21579 422 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 GJB2P29033 226 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 PIP4K2AP48426 406 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-208ENST00000589857 UBE2HP62256 183 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 HS1BP3Q53T59 392 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 GORABQ5T7V8 394 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 ATG9AQ7Z3C6 839 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 CCDC83Q8IWF9 413 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 NEUROD6Q96NK8 337 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 CTNNA3Q9UI47 895 aa12.58□□□□□ -0.4
ZNF540-208ENST00000589857 C4AP0C0L4 1744 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 ERVV-1B6SEH8 477 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 IFIT1P09914 478 aaKnown RBP12.57□□□□□ -0.4
ZNF540-208ENST00000589857 IFIT5Q13325 482 aaKnown RBP12.57□□□□□ -0.4
ZNF540-208ENST00000589857 TTC39AQ5SRH9 613 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 CCDC183Q5T5S1 534 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 ZSCAN25Q6NSZ9 544 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 GIGYF2Q6Y7W6 1299 aaKnown RBP12.57□□□□□ -0.4
ZNF540-208ENST00000589857 TTLL6Q8N841 843 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 GPT2Q8TD30 523 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 NEK1Q96PY6 1258 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 SLC4A9Q96Q91 983 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 PPP1R9BQ96SB3 815 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 ZNF831Q5JPB2 1677 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 WDR90Q96KV7 1748 aa12.57□□□□□ -0.4
ZNF540-208ENST00000589857 AFDNP55196 1824 aaKnown RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 SPEF2Q9C093 1822 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 H0YIN7 160 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 RNF113AO15541 343 aaKnown RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 HOXD11P31277 338 aaPredicted RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 HTRA3P83110 453 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 ADCK5Q3MIX3 580 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 ZMYM1Q5SVZ6 1142 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms