RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 ANKIB1Q9P2G1 1089 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 AFF2P51816 1311 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 COL16A1Q07092 1604 aaPredicted RBP7.95□□□□□ -1.14
SMAD4-208ENST00000589706 FMN1Q68DA7 1419 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 FGD6Q6ZV73 1430 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 KCNA6P17658 529 aa7.94□□□□□ -1.14
SMAD4-208ENST00000589706 HPS1Q92902 700 aa7.94□□□□□ -1.14
SMAD4-208ENST00000589706 KLRG1Q96E93 195 aa7.94□□□□□ -1.14
SMAD4-208ENST00000589706 HSH2DQ96JZ2 352 aa7.94□□□□□ -1.14
SMAD4-208ENST00000589706 SPG7Q9UQ90 795 aa7.94□□□□□ -1.14
SMAD4-208ENST00000589706 MAP3K1Q13233 1512 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 A0A0G2JS52 829 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 UPP2O95045 317 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 CTSOP43234 321 aaPredicted RBP7.93□□□□□ -1.14
SMAD4-208ENST00000589706 ARSDP51689 593 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 POU4F2Q12837 409 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 XKR5Q6UX68 686 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 BICDL1Q6ZP65 573 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 LINC00528Q8N1L1 170 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 TGIF2Q9GZN2 237 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 FNDC3AQ9Y2H6 1198 aaKnown RBP7.93□□□□□ -1.14
SMAD4-208ENST00000589706 DHX29Q7Z478 1369 aaKnown RBP7.93□□□□□ -1.14
SMAD4-208ENST00000589706 KIAA1107Q9UPP5 1409 aa7.93□□□□□ -1.14
SMAD4-208ENST00000589706 LRRIQ1Q96JM4 1722 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 CTSHP09668 335 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 INPP5BP32019 993 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 NBPF10Q6P3W6 841 aaKnown RBP7.92□□□□□ -1.14
SMAD4-208ENST00000589706 CRELD1Q96HD1 420 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 NEUROD4Q9HD90 331 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 PPP1R1BQ9UD71 204 aaPredicted RBP7.92□□□□□ -1.14
SMAD4-208ENST00000589706 USP20Q9Y2K6 914 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 FANCIQ9NVI1 1328 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 MSH6P52701 1360 aa7.92□□□□□ -1.14
SMAD4-208ENST00000589706 TNFRSF21O75509 655 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 EIF4BP23588 611 aaKnown RBP7.91□□□□□ -1.14
SMAD4-208ENST00000589706 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.91□□□□□ -1.14
SMAD4-208ENST00000589706 WDR44Q5JSH3 913 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 PRICKLE2Q7Z3G6 844 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 BTLAQ7Z6A9 289 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 CMTR1Q8N1G2 835 aaKnown RBP7.91□□□□□ -1.14
SMAD4-208ENST00000589706 UBXN4Q92575 508 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 ZIC5Q96T25 663 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 FOXD3Q9UJU5 478 aaPredicted RBP7.91□□□□□ -1.14
SMAD4-208ENST00000589706 EID1Q9Y6B2 187 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 SHPRHQ149N8 1683 aa7.91□□□□□ -1.14
SMAD4-208ENST00000589706 UBR1Q8IWV7 1749 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 GPATCH8Q9UKJ3 1502 aaKnown RBP7.9□□□□□ -1.14
SMAD4-208ENST00000589706 PLEKHH2Q8IVE3 1493 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 CAPN5O15484 640 aaPredicted RBP7.9□□□□□ -1.14
SMAD4-208ENST00000589706 ATP4AP20648 1035 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 USPL1Q5W0Q7 1092 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 PDE12Q6L8Q7 609 aaKnown RBP7.9□□□□□ -1.14
SMAD4-208ENST00000589706 LYSMD3Q7Z3D4 306 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 ZNF438Q7Z4V0 828 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 SNX29Q8TEQ0 813 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 CCDC74AQ96AQ1 378 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 CCSER2Q9H7U1 834 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 CFDP1Q9UEE9 299 aaPredicted RBP7.9□□□□□ -1.14
SMAD4-208ENST00000589706 RTCBQ9Y3I0 505 aaKnown RBP7.9□□□□□ -1.14
SMAD4-208ENST00000589706 KCNMB2Q9Y691 235 aa7.9□□□□□ -1.14
SMAD4-208ENST00000589706 PRDM15P57071 1507 aaPredicted RBP7.89□□□□□ -1.15
SMAD4-208ENST00000589706 NCOA2Q15596 1464 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 ARHGAP23Q9P227 1491 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 GIPC1O14908 333 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 DEKP35659 375 aaKnown RBP7.89□□□□□ -1.15
SMAD4-208ENST00000589706 PRR20EP86478 221 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 PRR20CP86479 221 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 PRR20DP86480 221 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 PRR20BP86481 221 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 PRR20AP86496 221 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 TRIP4Q15650 581 aaPredicted RBP7.89□□□□□ -1.15
SMAD4-208ENST00000589706 GLIPR1L2Q4G1C9 344 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 ARSJQ5FYB0 599 aaPredicted RBP7.89□□□□□ -1.15
SMAD4-208ENST00000589706 LRRC69Q6ZNQ3 347 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 RNF217Q8TC41 542 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 TINF2Q9BSI4 451 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 ELP3Q9H9T3 547 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 ZFYVE28Q9HCC9 887 aa7.89□□□□□ -1.15
SMAD4-208ENST00000589706 SLIT1O75093 1534 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 A0A1B0GTH6 734 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 BMP2P12643 396 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 YY1P25490 414 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 PI16Q6UXB8 463 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 TRIM67Q6ZTA4 783 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 EPS8L3Q8TE67 593 aaKnown RBP7.88□□□□□ -1.15
SMAD4-208ENST00000589706 SLC26A8Q96RN1 970 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 OSBPL7Q9BZF2 842 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 C12orf49Q9H741 205 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 CAPN10Q9HC96 672 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 TIMMDC1Q9NPL8 285 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 NLRP2Q9NX02 1062 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 PLA2G2EQ9NZK7 142 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 LRP5O75197 1615 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 TIAM1Q13009 1591 aa7.88□□□□□ -1.15
SMAD4-208ENST00000589706 RTEL1-TNFRSF6BF6WH68 1400 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 PHACTR2O75167 634 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 MSX1P28360 303 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 IRS1P35568 1242 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 MMRN1Q13201 1228 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 C6orf118Q5T5N4 469 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms