RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 RBM8AQ9Y5S9 174 aaKnown RBP23.86■■□□□ 1.41
TRIM47-204ENST00000587339 TNS1Q9HBL0 1735 aaKnown RBP23.86■■□□□ 1.41
TRIM47-204ENST00000587339 ST5P78524 1137 aa23.86■■□□□ 1.41
TRIM47-204ENST00000587339 NECTIN1Q15223 517 aa23.86■■□□□ 1.41
TRIM47-204ENST00000587339 TTF1Q15361 905 aaPredicted RBP23.86■■□□□ 1.41
TRIM47-204ENST00000587339 PRPF40BQ6NWY9 871 aaKnown RBP23.86■■□□□ 1.41
TRIM47-204ENST00000587339 TAF1P21675 1872 aa23.86■■□□□ 1.41
TRIM47-204ENST00000587339 TNRC6CQ9HCJ0 1690 aaKnown RBP23.85■■□□□ 1.41
TRIM47-204ENST00000587339 ZMYM1Q5SVZ6 1142 aa23.85■■□□□ 1.41
TRIM47-204ENST00000587339 RASEFQ8IZ41 740 aa23.85■■□□□ 1.41
TRIM47-204ENST00000587339 HSP90AA1P07900 732 aaKnown RBP23.84■■□□□ 1.41
TRIM47-204ENST00000587339 ZFYP08048 801 aaPredicted RBP23.84■■□□□ 1.41
TRIM47-204ENST00000587339 FLAD1Q8NFF5 587 aa23.84■■□□□ 1.41
TRIM47-204ENST00000587339 ZKSCAN1P17029 563 aaPredicted RBP23.84■■□□□ 1.41
TRIM47-204ENST00000587339 UBE4AQ14139 1066 aa23.84■■□□□ 1.41
TRIM47-204ENST00000587339 COL23A1Q86Y22 540 aaPredicted RBP23.84■■□□□ 1.41
TRIM47-204ENST00000587339 IL27Q8NEV9 243 aa23.84■■□□□ 1.41
TRIM47-204ENST00000587339 CYP2E1P05181 493 aaPredicted RBP23.83■■□□□ 1.41
TRIM47-204ENST00000587339 SLFNL1Q499Z3 407 aa23.83■■□□□ 1.41
TRIM47-204ENST00000587339 CCDC129Q6ZRS4 1044 aa23.83■■□□□ 1.41
TRIM47-204ENST00000587339 UPF3BQ9BZI7 483 aaKnown RBP23.83■■□□□ 1.41
TRIM47-204ENST00000587339 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.83■■□□□ 1.41
TRIM47-204ENST00000587339 AKAP11Q9UKA4 1901 aa23.83■■□□□ 1.4
TRIM47-204ENST00000587339 DDR1Q08345 913 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 SPATA5Q8NB90 893 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 KCNB2Q92953 911 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 HMG20BQ9P0W2 317 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 POLRMTO00411 1230 aaKnown RBP23.82■■□□□ 1.4
TRIM47-204ENST00000587339 BCAMP50895 628 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 RNF20Q5VTR2 975 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 CREB3L3Q68CJ9 461 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 NLGN1Q8N2Q7 840 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 RGPD3A6NKT7 1758 aaPredicted RBP23.82■■□□□ 1.4
TRIM47-204ENST00000587339 RGPD4Q7Z3J3 1758 aa23.82■■□□□ 1.4
TRIM47-204ENST00000587339 MCM2P49736 904 aa23.81■■□□□ 1.4
TRIM47-204ENST00000587339 RASGRF1Q13972 1273 aa23.81■■□□□ 1.4
TRIM47-204ENST00000587339 ANKRD2Q9GZV1 360 aa23.81■■□□□ 1.4
TRIM47-204ENST00000587339 ZSCAN25Q6NSZ9 544 aa23.8■■□□□ 1.4
TRIM47-204ENST00000587339 ANP32EQ9BTT0 268 aa23.8■■□□□ 1.4
TRIM47-204ENST00000587339 MAST3O60307 1309 aa23.8■■□□□ 1.4
TRIM47-204ENST00000587339 GRAPQ13588 217 aa23.8■■□□□ 1.4
TRIM47-204ENST00000587339 WASHC4Q2M389 1173 aa23.8■■□□□ 1.4
TRIM47-204ENST00000587339 GRAPLQ8TC17 118 aaPredicted RBP23.8■■□□□ 1.4
TRIM47-204ENST00000587339 RPGRQ92834 1020 aaKnown RBP23.8■■□□□ 1.4
TRIM47-204ENST00000587339 A0A1B0GUL6 1792 aa23.79■■□□□ 1.4
TRIM47-204ENST00000587339 SLC27A2O14975 620 aa23.79■■□□□ 1.4
TRIM47-204ENST00000587339 CRY2Q49AN0 593 aa23.79■■□□□ 1.4
TRIM47-204ENST00000587339 IDH1O75874 414 aaKnown RBP23.78■■□□□ 1.4
TRIM47-204ENST00000587339 CAVIN4Q5BKX8 364 aa23.78■■□□□ 1.4
TRIM47-204ENST00000587339 APPBP2Q92624 585 aa23.78■■□□□ 1.4
TRIM47-204ENST00000587339 OSBP2Q969R2 916 aa23.78■■□□□ 1.4
TRIM47-204ENST00000587339 PIH1D3Q9NQM4 214 aaKnown RBP23.78■■□□□ 1.4
TRIM47-204ENST00000587339 U3KPZ7 1027 aaPredicted RBP23.78■■□□□ 1.4
TRIM47-204ENST00000587339 WTIPA6NIX2 430 aaPredicted RBP23.78■■□□□ 1.4
TRIM47-204ENST00000587339 SLC9C2Q5TAH2 1124 aa23.78■■□□□ 1.4
TRIM47-204ENST00000587339 CASTP20810 708 aaKnown RBP23.77■■□□□ 1.4
TRIM47-204ENST00000587339 GYG1P46976 350 aa23.77■■□□□ 1.4
TRIM47-204ENST00000587339 TM6SF1Q9BZW5 370 aa23.77■■□□□ 1.4
TRIM47-204ENST00000587339 GNL3LQ9NVN8 582 aaKnown RBP23.77■■□□□ 1.4
TRIM47-204ENST00000587339 ZNF804BA4D1E1 1349 aa23.77■■□□□ 1.4
TRIM47-204ENST00000587339 PNPLA7Q6ZV29 1317 aa23.77■■□□□ 1.4
TRIM47-204ENST00000587339 M0R2C6 588 aa23.76■■□□□ 1.39
TRIM47-204ENST00000587339 ADCK5Q3MIX3 580 aa23.76■■□□□ 1.39
TRIM47-204ENST00000587339 VPS37DQ86XT2 251 aa23.76■■□□□ 1.39
TRIM47-204ENST00000587339 JAKMIP1Q96N16 626 aaKnown RBP23.76■■□□□ 1.39
TRIM47-204ENST00000587339 DSCC1Q9BVC3 393 aa23.76■■□□□ 1.39
TRIM47-204ENST00000587339 ADD2P35612 726 aa23.76■■□□□ 1.39
TRIM47-204ENST00000587339 EN1Q05925 392 aaPredicted RBP23.76■■□□□ 1.39
TRIM47-204ENST00000587339 EZH2Q15910 746 aaKnown RBP23.76■■□□□ 1.39
TRIM47-204ENST00000587339 VPS53Q5VIR6 699 aa23.75■■□□□ 1.39
TRIM47-204ENST00000587339 CAMKK2Q96RR4 588 aa23.75■■□□□ 1.39
TRIM47-204ENST00000587339 FOXD4L1Q9NU39 408 aa23.75■■□□□ 1.39
TRIM47-204ENST00000587339 CHMP5Q9NZZ3 219 aa23.75■■□□□ 1.39
TRIM47-204ENST00000587339 HSPD1P10809 573 aaKnown RBP23.74■■□□□ 1.39
TRIM47-204ENST00000587339 PUS7LQ9H0K6 701 aaKnown RBP23.74■■□□□ 1.39
TRIM47-204ENST00000587339 PSMA5P28066 241 aa23.74■■□□□ 1.39
TRIM47-204ENST00000587339 UBE3CQ15386 1083 aa23.74■■□□□ 1.39
TRIM47-204ENST00000587339 TSGA10IPQ3SY00 556 aa23.74■■□□□ 1.39
TRIM47-204ENST00000587339 RBM17Q96I25 401 aaKnown RBP23.74■■□□□ 1.39
TRIM47-204ENST00000587339 FAM84BQ96KN1 310 aaPredicted RBP23.74■■□□□ 1.39
TRIM47-204ENST00000587339 ZSWIM6Q9HCJ5 1215 aa23.74■■□□□ 1.39
TRIM47-204ENST00000587339 CYP46A1Q9Y6A2 500 aa23.74■■□□□ 1.39
TRIM47-204ENST00000587339 DDIT3P35638 169 aa23.73■■□□□ 1.39
TRIM47-204ENST00000587339 MAP3K12Q12852 859 aa23.73■■□□□ 1.39
TRIM47-204ENST00000587339 NBR1Q14596 966 aa23.73■■□□□ 1.39
TRIM47-204ENST00000587339 TMX3Q96JJ7 454 aa23.73■■□□□ 1.39
TRIM47-204ENST00000587339 TTC14Q96N46 770 aa23.73■■□□□ 1.39
TRIM47-204ENST00000587339 IQSEC3Q9UPP2 1182 aaPredicted RBP23.73■■□□□ 1.39
TRIM47-204ENST00000587339 PDE6AP16499 860 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 ANKIB1Q9P2G1 1089 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 MYH7P12883 1935 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 RPAP1Q9BWH6 1393 aaPredicted RBP23.72■■□□□ 1.39
TRIM47-204ENST00000587339 KLRG2A4D1S0 409 aaPredicted RBP23.72■■□□□ 1.39
TRIM47-204ENST00000587339 KRT32Q14532 448 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 NOL8Q76FK4 1167 aaKnown RBP23.72■■□□□ 1.39
TRIM47-204ENST00000587339 RUFY3Q7L099 469 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 WWC3Q9ULE0 1092 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 ZNF532Q9HCE3 1301 aa23.72■■□□□ 1.39
TRIM47-204ENST00000587339 CYP21A2P08686 494 aa23.71■■□□□ 1.39
TRIM47-204ENST00000587339 MMP10P09238 476 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms