RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 TCIRG1Q13488 830 aa11.8□□□□□ -0.52
CAPN3-219ENST00000569136 CSPP1Q1MSJ5 1256 aa11.8□□□□□ -0.52
CAPN3-219ENST00000569136 STK31Q9BXU1 1019 aa11.8□□□□□ -0.52
CAPN3-219ENST00000569136 COL5A3P25940 1745 aaPredicted RBP11.8□□□□□ -0.52
CAPN3-219ENST00000569136 DDX58O95786 925 aaKnown RBP11.79□□□□□ -0.52
CAPN3-219ENST00000569136 ANXA1P04083 346 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 TRIM28Q13263 835 aaKnown RBP11.79□□□□□ -0.52
CAPN3-219ENST00000569136 TWISTNBQ3B726 338 aaPredicted RBP11.79□□□□□ -0.52
CAPN3-219ENST00000569136 STYK1Q6J9G0 422 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 ARHGAP27Q6ZUM4 889 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 RIC3Q7Z5B4 369 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 ZNF622Q969S3 477 aaKnown RBP eCLIP11.79□□□□□ -0.52
CAPN3-219ENST00000569136 MASTLQ96GX5 879 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 MTRQ99707 1265 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
CAPN3-219ENST00000569136 TJP1Q07157 1748 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 COL24A1Q17RW2 1714 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 UBR2Q8IWV8 1755 aa11.79□□□□□ -0.52
CAPN3-219ENST00000569136 SIPA1L3O60292 1781 aaPredicted RBP11.78□□□□□ -0.52
CAPN3-219ENST00000569136 NR1I2O75469 434 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 FDX1P10109 184 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 SRGNP10124 158 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 ALDH1B1P30837 517 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 SLC10A5Q5PT55 438 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 TSR2Q969E8 191 aaKnown RBP11.78□□□□□ -0.52
CAPN3-219ENST00000569136 RNF123Q5XPI4 1314 aa11.78□□□□□ -0.52
CAPN3-219ENST00000569136 PXDNLA1KZ92 1463 aa11.77□□□□□ -0.52
CAPN3-219ENST00000569136 SENP3-EIF4A1A0A087X0R7 540 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 VAMP4O75379 141 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 HSP90B1P14625 803 aaKnown RBP11.77□□□□□ -0.53
CAPN3-219ENST00000569136 NPR1P16066 1061 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 GPTP24298 496 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
CAPN3-219ENST00000569136 MORN1Q5T089 497 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 SOGA3Q5TF21 947 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 SUSD4Q5VX71 490 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 TSPYL6Q8N831 410 aa11.77□□□□□ -0.53
CAPN3-219ENST00000569136 TUBGCP6Q96RT7 1819 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 FAM177BA6PVY3 158 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 E9PSI1 815 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 SH3D19Q5HYK7 790 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 NLRP10Q86W26 655 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 PCMTD1Q96MG8 357 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-219ENST00000569136 NLRP3Q96P20 1036 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 WWC3Q9ULE0 1092 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 SLC27A5Q9Y2P5 690 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 ATP10DQ9P241 1426 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 UTRNP46939 3433 aa11.76□□□□□ -0.53
CAPN3-219ENST00000569136 HOXA10P31260 410 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 EXOSC9Q06265 439 aaKnown RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 SKIV2LQ15477 1246 aaKnown RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 RSBN1LQ6PCB5 846 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 KSR2Q6VAB6 950 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 CCDC24Q8N4L8 307 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 ISCA1Q9BUE6 129 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 IL21Q9HBE4 155 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 TRMT112Q9UI30 125 aaKnown RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 ZNF521Q96K83 1311 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 FANCIQ9NVI1 1328 aa11.75□□□□□ -0.53
CAPN3-219ENST00000569136 IBTKQ9P2D0 1353 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-219ENST00000569136 GOLGB1Q14789 3259 aaKnown RBP11.74□□□□□ -0.53
CAPN3-219ENST00000569136 NTSR2O95665 410 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 TMEM132AQ24JP5 1023 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 CRY2Q49AN0 593 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 CC2D2BQ6DHV5 1058 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 SCUBE3Q8IX30 993 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 ZNF428Q96B54 188 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 LIMD1Q9UGP4 676 aa11.74□□□□□ -0.53
CAPN3-219ENST00000569136 C6orf229H3BNL8 230 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 SPTLC1O15269 473 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 C4AP0C0L4 1744 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 UBN2Q6ZU65 1347 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 CCDC191Q8NCU4 936 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 SH3TC1Q8TE82 1336 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 RPGRQ92834 1020 aaKnown RBP11.73□□□□□ -0.53
CAPN3-219ENST00000569136 RBM17Q96I25 401 aaKnown RBP11.73□□□□□ -0.53
CAPN3-219ENST00000569136 CRAMP1Q96RY5 1269 aa11.73□□□□□ -0.53
CAPN3-219ENST00000569136 METTL22Q9BUU2 404 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-219ENST00000569136 TMX4Q9H1E5 349 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-219ENST00000569136 PHAXQ9H814 394 aaKnown RBP11.73□□□□□ -0.53
CAPN3-219ENST00000569136 DLG5Q8TDM6 1919 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 BBOX1O75936 387 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 SLFN5Q08AF3 891 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 Q3C1V9 767 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 TJAP1Q5JTD0 557 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 RTKN2Q8IZC4 609 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 ZNF784Q8NCA9 323 aaPredicted RBP11.72□□□□□ -0.53
CAPN3-219ENST00000569136 PROCA1Q8NCQ7 364 aaPredicted RBP11.72□□□□□ -0.53
CAPN3-219ENST00000569136 ZNF516Q92618 1163 aa11.72□□□□□ -0.53
CAPN3-219ENST00000569136 PI4KAP2A4QPH2 592 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 ATP5J2-PTCD1G3V325 749 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 C21orf2O43822 256 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 LMNB1P20700 586 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 PRPF40BQ6NWY9 871 aaKnown RBP11.71□□□□□ -0.53
CAPN3-219ENST00000569136 PI4KAP1Q8N8J0 262 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 ZBTB38Q8NAP3 1195 aaPredicted RBP11.71□□□□□ -0.53
CAPN3-219ENST00000569136 C7orf43Q8WVR3 580 aa11.71□□□□□ -0.53
CAPN3-219ENST00000569136 MAP3K2Q9Y2U5 619 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms