RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CENPBP07199 599 aaPredicted RBP8.27□□□□□ -1.09
VPS39-209ENST00000568029 POU4F2Q12837 409 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.27□□□□□ -1.09
VPS39-209ENST00000568029 COX20Q5RI15 118 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 PRICKLE2Q7Z3G6 844 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 C7orf43Q8WVR3 580 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 KIFC2Q96AC6 838 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 PHACTR1Q9C0D0 580 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 SENP2Q9HC62 589 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 SLIT2O94813 1529 aa8.27□□□□□ -1.09
VPS39-209ENST00000568029 RPRD2Q5VT52 1461 aaKnown RBP8.26□□□□□ -1.09
VPS39-209ENST00000568029 IQGAP3Q86VI3 1631 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 ST8SIA5O15466 376 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 FAM13AO94988 1023 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 ABL1P00519 1130 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 TATP17735 454 aaPredicted RBP8.26□□□□□ -1.09
VPS39-209ENST00000568029 XPCQ01831 940 aaPredicted RBP8.26□□□□□ -1.09
VPS39-209ENST00000568029 NAA30Q147X3 362 aaPredicted RBP8.26□□□□□ -1.09
VPS39-209ENST00000568029 SH3PXD2AQ5TCZ1 1133 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 STIM2Q9P246 746 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 DNMT3LQ9UJW3 386 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 NRAPQ86VF7 1730 aa8.26□□□□□ -1.09
VPS39-209ENST00000568029 TONSLQ96HA7 1378 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 H3BRB1 525 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 TNFRSF10BO14763 440 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 TXLNAP40222 546 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 C11orf91Q3C1V1 193 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 FAM182BQ5T319 152 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 GLYCTKQ8IVS8 523 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 SAP130Q9H0E3 1048 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 TUT1Q9H6E5 874 aaKnown RBP8.25□□□□□ -1.09
VPS39-209ENST00000568029 TIMMDC1Q9NPL8 285 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 SLC52A1Q9NWF4 448 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 HCN4Q9Y3Q4 1203 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 DYRK1BQ9Y463 629 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 PARP3Q9Y6F1 533 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 NUP188Q5SRE5 1749 aa8.25□□□□□ -1.09
VPS39-209ENST00000568029 RREB1Q92766 1687 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 ATP4AP20648 1035 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 BRD2P25440 801 aaKnown RBP8.24□□□□□ -1.09
VPS39-209ENST00000568029 ZNF211Q13398 564 aaPredicted RBP8.24□□□□□ -1.09
VPS39-209ENST00000568029 ECM1Q16610 540 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 CCDC27Q2M243 656 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 ABTB2Q8N961 1025 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 MPHOSPH9Q99550 1183 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 LRFN2Q9ULH4 789 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 CEP350Q5VT06 3117 aa8.24□□□□□ -1.09
VPS39-209ENST00000568029 MAN1A2O60476 641 aa8.23□□□□□ -1.09
VPS39-209ENST00000568029 IER5Q5VY09 327 aa8.23□□□□□ -1.09
VPS39-209ENST00000568029 ALKBH2Q6NS38 261 aa8.23□□□□□ -1.09
VPS39-209ENST00000568029 TRIM47Q96LD4 638 aa8.23□□□□□ -1.09
VPS39-209ENST00000568029 ROBO2Q9HCK4 1378 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 SENP3-EIF4A1A0A087X0R7 540 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 FIGNL2A6NMB9 653 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 MSX1P28360 303 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 PHKA2P46019 1235 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 MFAP1P55081 439 aaKnown RBP8.22□□□□□ -1.09
VPS39-209ENST00000568029 ARHGAP4P98171 946 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 LBRQ14739 615 aaKnown RBP8.22□□□□□ -1.09
VPS39-209ENST00000568029 AIDAQ96BJ3 306 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 CRISPLD1Q9H336 500 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 ANKIB1Q9P2G1 1089 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 DACH1Q9UI36 760 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 NEXMIFQ5QGS0 1516 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 ANKRD30AQ9BXX3 1397 aa8.22□□□□□ -1.09
VPS39-209ENST00000568029 NWD2Q9ULI1 1742 aa8.21□□□□□ -1.09
VPS39-209ENST00000568029 F11P03951 625 aa8.21□□□□□ -1.1
VPS39-209ENST00000568029 ERCC3P19447 782 aa8.21□□□□□ -1.1
VPS39-209ENST00000568029 DGKZQ13574 1117 aa8.21□□□□□ -1.1
VPS39-209ENST00000568029 RHPN1Q8TCX5 695 aa8.21□□□□□ -1.1
VPS39-209ENST00000568029 ADGRL2O95490 1459 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 TGFBR3LH3BV60 316 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 RHOQP17081 205 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 EZH2Q15910 746 aaKnown RBP8.2□□□□□ -1.1
VPS39-209ENST00000568029 NOM1Q5C9Z4 860 aaKnown RBP8.2□□□□□ -1.1
VPS39-209ENST00000568029 ZNF787Q6DD87 383 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 UNC5CLQ8IV45 518 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 ZIC5Q96T25 663 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 ANO2Q9NQ90 1003 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 MYOM1P52179 1685 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 THSD7AQ9UPZ6 1657 aa8.2□□□□□ -1.1
VPS39-209ENST00000568029 CDC42BPGQ6DT37 1551 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 NRKQ7Z2Y5 1582 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 CLTCL1P53675 1640 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 MPSTP25325 297 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 MTMR3Q13615 1198 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 KRT27Q7Z3Y8 459 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 NLRP8Q86W28 1048 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS39-209ENST00000568029 IFT43Q96FT9 208 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 CITED4Q96RK1 184 aa8.19□□□□□ -1.1
VPS39-209ENST00000568029 BIN2Q9UBW5 565 aaPredicted RBP8.19□□□□□ -1.1
VPS39-209ENST00000568029 SLC35F4A4IF30 521 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 BAG6P46379 1132 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 EIF1AXP47813 144 aaKnown RBP8.18□□□□□ -1.1
VPS39-209ENST00000568029 SAMD5Q5TGI4 173 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 ETFBKMTQ8IXQ9 262 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 GMCL1Q96IK5 515 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 SUSD3Q96L08 255 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 FAM13BQ9NYF5 915 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms