RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 USP17L1Q7RTZ2 530 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 SAMD7Q7Z3H4 446 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 SMC4Q9NTJ3 1288 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 MYO3BQ8WXR4 1341 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 CCDC57Q2TAC2 916 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 KIF4BQ2VIQ3 1234 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 TBC1D10BQ4KMP7 808 aaPredicted RBP17.76■□□□□ 0.43
SMPD3-204ENST00000563396 DACT2Q5SW24 774 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 CST9Q5W186 159 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 GLIS2Q9BZE0 524 aaPredicted RBP17.76■□□□□ 0.43
SMPD3-204ENST00000563396 CHMP3Q9Y3E7 222 aa17.76■□□□□ 0.43
SMPD3-204ENST00000563396 STRIP1Q5VSL9 837 aa17.75■□□□□ 0.43
SMPD3-204ENST00000563396 CDC37L1Q7L3B6 337 aa17.75■□□□□ 0.43
SMPD3-204ENST00000563396 ANKRD44Q8N8A2 993 aa17.75■□□□□ 0.43
SMPD3-204ENST00000563396 BICC1Q9H694 974 aaKnown RBP17.75■□□□□ 0.43
SMPD3-204ENST00000563396 HSPA1AP0DMV8 641 aaKnown RBP17.74■□□□□ 0.43
SMPD3-204ENST00000563396 HSPA1BP0DMV9 641 aaKnown RBP17.74■□□□□ 0.43
SMPD3-204ENST00000563396 VEGFBP49765 207 aa17.74■□□□□ 0.43
SMPD3-204ENST00000563396 DIEXFQ68CQ4 756 aaKnown RBP17.74■□□□□ 0.43
SMPD3-204ENST00000563396 TLL2Q9Y6L7 1015 aa17.74■□□□□ 0.43
SMPD3-204ENST00000563396 KCNJ4P48050 445 aa17.73■□□□□ 0.43
SMPD3-204ENST00000563396 LDHAL6AQ6ZMR3 332 aa17.73■□□□□ 0.43
SMPD3-204ENST00000563396 ZNF594Q96JF6 807 aaPredicted RBP17.73■□□□□ 0.43
SMPD3-204ENST00000563396 USP44Q9H0E7 712 aa17.73■□□□□ 0.43
SMPD3-204ENST00000563396 ABT1Q9ULW3 272 aaKnown RBP17.73■□□□□ 0.43
SMPD3-204ENST00000563396 KIF16BQ96L93 1317 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 PITPNM2Q9BZ72 1349 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 PAPPA2Q9BXP8 1791 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 TAF5LO75529 589 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 USP17L8P0C7I0 530 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 MMP14P50281 582 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 RARSP54136 660 aaKnown RBP17.72■□□□□ 0.43
SMPD3-204ENST00000563396 DEFB115Q30KQ5 88 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 TAF7LQ5H9L4 462 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 MIER1Q8N108 512 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 HHIPL1Q96JK4 782 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 GGA3Q9NZ52 723 aa17.72■□□□□ 0.43
SMPD3-204ENST00000563396 MYH13Q9UKX3 1938 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 SNAP23O00161 211 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 CELF2O95319 508 aaKnown RBP17.71■□□□□ 0.43
SMPD3-204ENST00000563396 IL1R1P14778 569 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 KRT26Q7Z3Y9 468 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 SAPCD2Q86UD0 394 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 CD209Q9NNX6 404 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 MYOZ2Q9NPC6 264 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 CNNM1Q9NRU3 951 aa17.71■□□□□ 0.43
SMPD3-204ENST00000563396 HELBQ8NG08 1087 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-204ENST00000563396 API5Q9BZZ5 524 aaKnown RBP17.7■□□□□ 0.42
SMPD3-204ENST00000563396 RIPOR2Q9Y4F9 1068 aa17.7■□□□□ 0.42
SMPD3-204ENST00000563396 ASTN2O75129 1339 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-204ENST00000563396 WDR33Q9C0J8 1336 aaKnown RBP17.7■□□□□ 0.42
SMPD3-204ENST00000563396 UBE4AQ14139 1066 aa17.69■□□□□ 0.42
SMPD3-204ENST00000563396 ZNF804AQ7Z570 1209 aa17.69■□□□□ 0.42
SMPD3-204ENST00000563396 ARHGAP45Q92619 1136 aa17.69■□□□□ 0.42
SMPD3-204ENST00000563396 DCPSQ96C86 337 aaKnown RBP17.69■□□□□ 0.42
SMPD3-204ENST00000563396 MXD3Q9BW11 206 aa17.69■□□□□ 0.42
SMPD3-204ENST00000563396 NOB1Q9ULX3 412 aaKnown RBP17.69■□□□□ 0.42
SMPD3-204ENST00000563396 MROH5Q6ZUA9 1318 aa17.69■□□□□ 0.42
SMPD3-204ENST00000563396 ADM5C9JUS6 153 aa17.68■□□□□ 0.42
SMPD3-204ENST00000563396 FKBP1AP62942 108 aaKnown RBP17.68■□□□□ 0.42
SMPD3-204ENST00000563396 RBM26Q5T8P6 1007 aaKnown RBP17.68■□□□□ 0.42
SMPD3-204ENST00000563396 TTLL5Q6EMB2 1281 aa17.68■□□□□ 0.42
SMPD3-204ENST00000563396 USP48Q86UV5 1035 aa17.68■□□□□ 0.42
SMPD3-204ENST00000563396 VGLL2Q8N8G2 317 aa17.68■□□□□ 0.42
SMPD3-204ENST00000563396 PUS3Q9BZE2 481 aaKnown RBP17.68■□□□□ 0.42
SMPD3-204ENST00000563396 COL1A1P02452 1464 aaPredicted RBP17.68■□□□□ 0.42
SMPD3-204ENST00000563396 ECE1P42892 770 aa17.67■□□□□ 0.42
SMPD3-204ENST00000563396 GTF2IP78347 998 aa17.67■□□□□ 0.42
SMPD3-204ENST00000563396 ANGEL2Q5VTE6 544 aaKnown RBP17.67■□□□□ 0.42
SMPD3-204ENST00000563396 SULF1Q8IWU6 871 aa17.67■□□□□ 0.42
SMPD3-204ENST00000563396 CAPNS2Q96L46 248 aa17.67■□□□□ 0.42
SMPD3-204ENST00000563396 RFX5P48382 616 aaPredicted RBP17.66■□□□□ 0.42
SMPD3-204ENST00000563396 SCARF1Q14162 830 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 OGFOD1Q8N543 542 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 CERS5Q8N5B7 392 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 ZBED3Q96IU2 234 aaPredicted RBP17.66■□□□□ 0.42
SMPD3-204ENST00000563396 WBP1LQ9NX94 342 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 FAM205AQ6ZU69 1335 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 LAMB1P07942 1786 aa17.66■□□□□ 0.42
SMPD3-204ENST00000563396 WNT10BO00744 389 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 LRRC24Q50LG9 513 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 CYP4F22Q6NT55 531 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 DLK2Q6UY11 383 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 FBXW7Q969H0 707 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 ZNF408Q9H9D4 720 aa17.65■□□□□ 0.42
SMPD3-204ENST00000563396 UBTFL1P0CB47 393 aaPredicted RBP17.64■□□□□ 0.41
SMPD3-204ENST00000563396 HNRNPUQ00839 825 aaKnown RBP eCLIP17.64■□□□□ 0.41
SMPD3-204ENST00000563396 NBPF9Q3BBW0 867 aa17.64■□□□□ 0.41
SMPD3-204ENST00000563396 INTS3Q68E01 1043 aaKnown RBP17.64■□□□□ 0.41
SMPD3-204ENST00000563396 KIAA0825Q8IV33 1275 aa17.64■□□□□ 0.41
SMPD3-204ENST00000563396 CDCA5Q96FF9 252 aa17.64■□□□□ 0.41
SMPD3-204ENST00000563396 GBA2Q9HCG7 927 aaPredicted RBP17.64■□□□□ 0.41
SMPD3-204ENST00000563396 HDAC9Q9UKV0 1011 aa17.64■□□□□ 0.41
SMPD3-204ENST00000563396 ZBED9Q6R2W3 1325 aa17.64■□□□□ 0.41
SMPD3-204ENST00000563396 FOXN1O15353 648 aa17.63■□□□□ 0.41
SMPD3-204ENST00000563396 PLIN1O60240 522 aa17.63■□□□□ 0.41
SMPD3-204ENST00000563396 PDE8BO95263 885 aa17.63■□□□□ 0.41
SMPD3-204ENST00000563396 MAP2K1Q02750 393 aaPredicted RBP17.63■□□□□ 0.41
SMPD3-204ENST00000563396 IFFO2Q5TF58 517 aa17.63■□□□□ 0.41
SMPD3-204ENST00000563396 MTMR14Q8NCE2 650 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms