RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PPEF1O14829 653 aaPredicted RBP10.87□□□□□ -0.67
VPS39-205ENST00000562258 ZNF76P36508 570 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 RAB3GAP1Q15042 981 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ILDR1Q86SU0 546 aaPredicted RBP10.87□□□□□ -0.67
VPS39-205ENST00000562258 PLEKHM2Q8IWE5 1019 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ZKSCAN3Q9BRR0 538 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 LRRC7Q96NW7 1537 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 MROH1Q8NDA8 1641 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ADGRB1O14514 1584 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 IGKV5-2P06315 115 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ADORA1P30542 326 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 PHKA1P46020 1223 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ERVV-1B6SEH8 477 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ANKRD1Q15327 319 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 MAPKAPK5Q8IW41 473 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 SMC5Q8IY18 1101 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 RBM8AQ9Y5S9 174 aaKnown RBP10.87□□□□□ -0.67
VPS39-205ENST00000562258 KDRP35968 1356 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 COL15A1P39059 1388 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 ZNF804BA4D1E1 1349 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 GOLGA8BA8MQT2 603 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 DTNBO60941 627 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 PI16Q6UXB8 463 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 WDR66Q8TBY9 1149 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 BRF1Q92994 677 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 VWDEQ8N2E2 1590 aa10.87□□□□□ -0.67
VPS39-205ENST00000562258 DLC1Q96QB1 1528 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 NRXN1Q9ULB1 1477 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 RNF113AO15541 343 aaKnown RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 PDE8BO95263 885 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 TPD52L1Q16890 204 aaPredicted RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 EPHA10Q5JZY3 1008 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SUPT20HQ8NEM7 779 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SYAP1Q96A49 352 aaPredicted RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 PIM2Q9P1W9 311 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 CLRN2A0PK11 232 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 CCDC102BQ68D86 513 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SPATA5Q8NB90 893 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 TTLL11Q8NHH1 800 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 CELF1Q92879 486 aaKnown RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 CHMP5Q9NZZ3 219 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SLIT1O75093 1534 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 DNTTIP2Q5QJE6 756 aaKnown RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 POTEAQ6S8J7 498 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 CLEC4GQ6UXB4 293 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 FAM227BQ96M60 508 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 NEK1Q96PY6 1258 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 ZHX3Q9H4I2 956 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 KAT14Q9H8E8 782 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SEC63Q9UGP8 760 aaKnown RBP10.86□□□□□ -0.67
VPS39-205ENST00000562258 MROH5Q6ZUA9 1318 aa10.86□□□□□ -0.67
VPS39-205ENST00000562258 SSBP05455 408 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS39-205ENST00000562258 PLS1Q14651 629 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 SDF4Q9BRK5 362 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 IQSEC2Q5JU85 1478 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 BBOX1O75936 387 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 RXRAP19793 462 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 PDCP20941 246 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 CATIPQ7Z7H3 387 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 NCOA3Q9Y6Q9 1424 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 GOLGA8AA7E2F4 631 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 STK38Q15208 465 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 TGFBRAP1Q8WUH2 860 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 DCCP43146 1447 aa10.85□□□□□ -0.67
VPS39-205ENST00000562258 TCP10L2B9ZVM9 353 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 SLC15A2Q16348 729 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 NCOA7Q8NI08 942 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 MYO3AQ8NEV4 1616 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 C3P01024 1663 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 ATP2B4P23634 1241 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 MCM2P49736 904 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 SSH3Q8TE77 659 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 CPA1P15085 419 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 PLCG2P16885 1265 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 NUCB2P80303 420 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 FNBP4Q8N3X1 1017 aaPredicted RBP10.84□□□□□ -0.67
VPS39-205ENST00000562258 NECAB1Q8N987 351 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 ABCC4O15439 1325 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 TNNI2P48788 182 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 EIF5P55010 431 aaKnown RBP10.84□□□□□ -0.67
VPS39-205ENST00000562258 ESR2Q92731 530 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 USP40Q9NVE5 1235 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 MROH2AA6NES4 1674 aa10.84□□□□□ -0.67
VPS39-205ENST00000562258 CCDC73Q6ZRK6 1079 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 ESYT1Q9BSJ8 1104 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 TLR7Q9NYK1 1049 aaKnown RBP10.83□□□□□ -0.68
VPS39-205ENST00000562258 ZNF521Q96K83 1311 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 GPAA1O43292 621 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 SSFA2P28290 1259 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 TMEM132AQ24JP5 1023 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 SEC62Q99442 399 aaKnown RBP10.83□□□□□ -0.68
VPS39-205ENST00000562258 ZNF277Q9NRM2 450 aaPredicted RBP10.83□□□□□ -0.68
VPS39-205ENST00000562258 TTC41PQ6P2S7 1318 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 ZNF532Q9HCE3 1301 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 KLF18A0A0U1RQI7 1052 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 ADRA2BP18089 450 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 WTAPQ15007 396 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 CCDC93Q567U6 631 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 MASTLQ96GX5 879 aa10.83□□□□□ -0.68
VPS39-205ENST00000562258 CDK5RAP3Q96JB5 506 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms