RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NMIQ13287 307 aaPredicted RBP8.96□□□□□ -0.98
VPS39-204ENST00000561818 ZMYM1Q5SVZ6 1142 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 TRAPPC3LQ5T215 181 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 SUSD4Q5VX71 490 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 CREB3L3Q68CJ9 461 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 RUFY3Q7L099 469 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 KRT27Q7Z3Y8 459 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 FBXL16Q8N461 479 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 ZGPATQ8N5A5 531 aaKnown RBP8.96□□□□□ -0.98
VPS39-204ENST00000561818 VGLL2Q8N8G2 317 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 KLHDC4Q8TBB5 520 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 SNX14Q9Y5W7 946 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 DDX60Q8IY21 1712 aaKnown RBP8.96□□□□□ -0.98
VPS39-204ENST00000561818 C4BP0C0L5 1744 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 RGPD3A6NKT7 1758 aaPredicted RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 RGPD4Q7Z3J3 1758 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 GOLIM4O00461 696 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 DHX16O60231 1041 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 PCP11498 1178 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 CASTP20810 708 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 MCM4P33991 863 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 NBR1Q14596 966 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 IMMTQ16891 758 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 LRRC24Q50LG9 513 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 NBPF5PQ86XG9 351 aaPredicted RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 LINC00116Q8NCU8 138 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 TMX3Q96JJ7 454 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 MTA3Q9BTC8 594 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 NACAP1Q9BZK3 213 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 QTRT2Q9H974 415 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 PDRG1Q9NUG6 133 aa8.95□□□□□ -0.98
VPS39-204ENST00000561818 TLR7Q9NYK1 1049 aaKnown RBP8.95□□□□□ -0.98
VPS39-204ENST00000561818 TAF5LO75529 589 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 FGFR2P21802 821 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 SLC4A3P48751 1232 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 ST5P78524 1137 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 TRDNQ13061 729 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 PRPF40BQ6NWY9 871 aaKnown RBP8.94□□□□□ -0.98
VPS39-204ENST00000561818 DDX46Q7L014 1031 aaKnown RBP8.94□□□□□ -0.98
VPS39-204ENST00000561818 JAKMIP1Q96N16 626 aaKnown RBP8.94□□□□□ -0.98
VPS39-204ENST00000561818 LLPHQ9BRT6 129 aaKnown RBP8.94□□□□□ -0.98
VPS39-204ENST00000561818 SBF2Q86WG5 1849 aa8.94□□□□□ -0.98
VPS39-204ENST00000561818 A0A0D9SFI3 127 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 SLC27A2O14975 620 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 PLSCR1O15162 318 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 KCNQ2O43526 872 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 MAP4K4O95819 1239 aaPredicted RBP8.93□□□□□ -0.98
VPS39-204ENST00000561818 MBD3O95983 291 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 RPS6KB1P23443 525 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 TIMM10P62072 90 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 HMGN5P82970 282 aaKnown RBP8.93□□□□□ -0.98
VPS39-204ENST00000561818 FKBP4Q02790 459 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS39-204ENST00000561818 L1TD1Q5T7N2 865 aaKnown RBP8.93□□□□□ -0.98
VPS39-204ENST00000561818 SPTY2D1Q68D10 685 aaPredicted RBP8.93□□□□□ -0.98
VPS39-204ENST00000561818 CCDC102BQ68D86 513 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 VPS37DQ86XT2 251 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 TTC14Q96N46 770 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 NEK1Q96PY6 1258 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 CNNM2Q9H8M5 875 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 DENND2AQ9ULE3 1009 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 TAF1LQ8IZX4 1826 aa8.93□□□□□ -0.98
VPS39-204ENST00000561818 MYH14Q7Z406 1995 aaKnown RBP8.93□□□□□ -0.98
VPS39-204ENST00000561818 ZNF804BA4D1E1 1349 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 NCLP19338 710 aaKnown RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 ADD2P35612 726 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 FGD1P98174 961 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 ALX1Q15699 326 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 WASHC4Q2M389 1173 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 RALYLQ86SE5 291 aaKnown RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 CNBD1Q8NA66 436 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 SPATA5Q8NB90 893 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 SYAP1Q96A49 352 aaPredicted RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 FAM227BQ96M60 508 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 TMX4Q9H1E5 349 aaPredicted RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 RNF41Q9H4P4 317 aaPredicted RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 SMC3Q9UQE7 1217 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 LEMD3Q9Y2U8 911 aa8.92□□□□□ -0.98
VPS39-204ENST00000561818 ZBTB12Q9Y330 459 aaPredicted RBP8.92□□□□□ -0.98
VPS39-204ENST00000561818 PNPLA7Q6ZV29 1317 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 PHF14O94880 888 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 CYP2E1P05181 493 aaPredicted RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 RCAN1P53805 252 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 RPS8P62241 208 aaKnown RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 GSE1Q14687 1217 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 SART3Q15020 963 aaKnown RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 GIMAP6Q6P9H5 292 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 CPLX2Q6PUV4 134 aaKnown RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 DHX32Q7L7V1 743 aaKnown RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 JARID2Q92833 1246 aaPredicted RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 AIDAQ96BJ3 306 aa8.91□□□□□ -0.98
VPS39-204ENST00000561818 ZNF594Q96JF6 807 aaPredicted RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 PUS3Q9BZE2 481 aaKnown RBP8.91□□□□□ -0.98
VPS39-204ENST00000561818 MYH7P12883 1935 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 MAST3O60307 1309 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 ZNF213O14771 459 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 HSPD1P10809 573 aaKnown RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 HCLS1P14317 486 aaPredicted RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 AK2P54819 239 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 CHRNDQ07001 517 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 PPP2R5BQ15173 497 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 332.8 ms