RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 TAF1P21675 1872 aa12.73□□□□□ -0.37
SMAD3-211ENST00000559460 SCN9AQ15858 1988 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 KDM3BQ7LBC6 1761 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 UNCXA6NJT0 531 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 IREB2P48200 963 aaKnown RBP12.72□□□□□ -0.37
SMAD3-211ENST00000559460 MMP14P50281 582 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 TAF1CQ15572 869 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-211ENST00000559460 COPS6Q7L5N1 327 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 ZNF428Q96B54 188 aa12.72□□□□□ -0.37
SMAD3-211ENST00000559460 COL25A1Q9BXS0 654 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-211ENST00000559460 HSP90B1P14625 803 aaKnown RBP12.71□□□□□ -0.37
SMAD3-211ENST00000559460 DEFB123Q8N688 67 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 XAGE3Q8WTP9 111 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 FAM89AQ96GI7 184 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 CLMNQ96JQ2 1002 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 FZD1Q9UP38 647 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 STXBP5LQ9Y2K9 1186 aa12.71□□□□□ -0.37
SMAD3-211ENST00000559460 XDHP47989 1333 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 SOX1O00570 391 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-211ENST00000559460 EVI5O60447 810 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 ANXA1P04083 346 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 ATP2B4P23634 1241 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 MAP3K11Q16584 847 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 SUPT20HL1Q3ZLR7 823 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 RTL5Q5HYW3 569 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-211ENST00000559460 PRO3102Q9H379 93 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 TSPYL4Q9UJ04 414 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 PPP2R3BQ9Y5P8 575 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 HTTP42858 3142 aa12.7□□□□□ -0.38
SMAD3-211ENST00000559460 SZT2Q5T011 3432 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 IRS4O14654 1257 aaPredicted RBP12.69□□□□□ -0.38
SMAD3-211ENST00000559460 ZBTB7BO15156 539 aaPredicted RBP12.69□□□□□ -0.38
SMAD3-211ENST00000559460 GNRH1P01148 92 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 PRMT2P55345 433 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 GPR153Q6NV75 609 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 ANKRD13AQ8IZ07 590 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 DEFB129Q9H1M3 183 aa12.69□□□□□ -0.38
SMAD3-211ENST00000559460 PSME4Q14997 1843 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 MYO1BO43795 1136 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 PDIA6Q15084 440 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 PROSER3Q2NL68 480 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 LRP10Q7Z4F1 713 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.68□□□□□ -0.38
SMAD3-211ENST00000559460 SHISA4Q96DD7 197 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 BIN2Q9UBW5 565 aaPredicted RBP12.68□□□□□ -0.38
SMAD3-211ENST00000559460 CEP290O15078 2479 aa12.68□□□□□ -0.38
SMAD3-211ENST00000559460 CUL9Q8IWT3 2517 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 TESPA1A2RU30 521 aaPredicted RBP12.67□□□□□ -0.38
SMAD3-211ENST00000559460 FARP2O94887 1054 aaPredicted RBP12.67□□□□□ -0.38
SMAD3-211ENST00000559460 CCDC152Q4G0S7 254 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 DACT2Q5SW24 774 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 STRIP1Q5VSL9 837 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 KIAA0825Q8IV33 1275 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 ANKRD18AQ8IVF6 992 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 OPTNQ96CV9 577 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 PTPN18Q99952 460 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 MXD3Q9BW11 206 aa12.67□□□□□ -0.38
SMAD3-211ENST00000559460 HOXD10P28358 340 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 GJA8P48165 433 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 GTF2A2P52657 109 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 UBXN2AP68543 259 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 CAP1Q01518 475 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 DLGAP5Q15398 846 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 RAET1EQ8TD07 263 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 RNF208Q9H0X6 261 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 ELP3Q9H9T3 547 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 STAP2Q9UGK3 403 aa12.66□□□□□ -0.38
SMAD3-211ENST00000559460 CCL15-CCL14A0A0B4J2E2 113 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 ATP5J2-PTCD1G3V325 749 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 PER1O15534 1290 aaPredicted RBP12.65□□□□□ -0.38
SMAD3-211ENST00000559460 GJB1P08034 283 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 LACTBP83111 547 aaPredicted RBP12.65□□□□□ -0.38
SMAD3-211ENST00000559460 MTFR1Q15390 333 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 CCL15Q16663 113 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 PLBD2Q8NHP8 589 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 COA1Q9GZY4 146 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 SEC31BQ9NQW1 1179 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 MED23Q9ULK4 1368 aa12.65□□□□□ -0.38
SMAD3-211ENST00000559460 CENPFP49454 3210 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 LAMB1P07942 1786 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 ECM2O94769 699 aaPredicted RBP12.64□□□□□ -0.39
SMAD3-211ENST00000559460 GRK4P32298 578 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 GJA5P36382 358 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 TTLL5Q6EMB2 1281 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 Q7L0L9 218 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 TRIM47Q96LD4 638 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 VEZTQ9HBM0 779 aa12.64□□□□□ -0.39
SMAD3-211ENST00000559460 BRCA2P51587 3418 aa12.63□□□□□ -0.39
SMAD3-211ENST00000559460 CCL5P13501 91 aa12.63□□□□□ -0.39
SMAD3-211ENST00000559460 ARHGAP39Q9C0H5 1083 aa12.63□□□□□ -0.39
SMAD3-211ENST00000559460 PRDM6Q9NQX0 595 aa12.63□□□□□ -0.39
SMAD3-211ENST00000559460 COL4A1P02462 1669 aa12.63□□□□□ -0.39
SMAD3-211ENST00000559460 ZNF804BA4D1E1 1349 aa12.62□□□□□ -0.39
SMAD3-211ENST00000559460 MAPK8IP3Q9UPT6 1336 aa12.62□□□□□ -0.39
SMAD3-211ENST00000559460 SSC5DA1L4H1 1573 aa12.62□□□□□ -0.39
SMAD3-211ENST00000559460 TLR2O60603 784 aa12.62□□□□□ -0.39
SMAD3-211ENST00000559460 HELBQ8NG08 1087 aaPredicted RBP12.62□□□□□ -0.39
SMAD3-211ENST00000559460 U2AF1L4Q8WU68 220 aaKnown RBP12.62□□□□□ -0.39
SMAD3-211ENST00000559460 BRI3BPQ8WY22 251 aa12.62□□□□□ -0.39
SMAD3-211ENST00000559460 CCDC85AQ96PX6 553 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms