RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ADGRL2O95490 1459 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 SYNMO15061 1565 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 LRRC10BA6NIK2 292 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 TIMM44O43615 452 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 ATP6V1G1O75348 118 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 BCAR3O75815 825 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 SLC4A2P04920 1241 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 RPL13P26373 211 aaKnown RBP9.69□□□□□ -0.86
USP3-211ENST00000559257 SLC8A1P32418 973 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 KCNJ6P48051 423 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 SLC7A5Q01650 507 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 PABPC4Q13310 644 aaKnown RBP eCLIP9.69□□□□□ -0.869e-6■■■■□ 24.7
USP3-211ENST00000559257 BMP2KLQ5H9B9 411 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 SYNE3Q6ZMZ3 975 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 ARMC9Q7Z3E5 817 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 CNNM3Q8NE01 707 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 SCLT1Q96NL6 688 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 PHACTR1Q9C0D0 580 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 IRF2BPLQ9H1B7 796 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 RETREG1Q9H6L5 497 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 KLC4Q9NSK0 619 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 DDX20Q9UHI6 824 aaKnown RBP9.69□□□□□ -0.86
USP3-211ENST00000559257 PHLPP2Q6ZVD8 1323 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 CROCC2H7BZ55 1655 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 CFAP74Q9C0B2 1584 aa9.69□□□□□ -0.86
USP3-211ENST00000559257 KRT38O76015 456 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 RNF8O76064 485 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 MAGEA10P43363 369 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 ZNF75DP51815 510 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 FBLN2P98095 1184 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 SLC4A8Q2Y0W8 1093 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 GJC2Q5T442 439 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 MIS18BP1Q6P0N0 1132 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 APLFQ8IW19 511 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 LRRC8AQ8IWT6 810 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 PARP9Q8IXQ6 854 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 AFAP1Q8N556 730 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 JAKMIP2Q96AA8 810 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 GORASP1Q9BQQ3 440 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 CAPN7Q9Y6W3 813 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 MRC2Q9UBG0 1479 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 RPAP1Q9BWH6 1393 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 KDM6BO15054 1643 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 IFT140Q96RY7 1462 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 ZEB2O60315 1214 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 SHOX2O60902 331 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 SKAP2O75563 359 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 CAPN15O75808 1086 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 GBP2P32456 591 aaPredicted RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 SNW1Q13573 536 aaKnown RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 LONRF2Q1L5Z9 754 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 THEMIS2Q5TEJ8 643 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 DPY19L2Q6NUT2 758 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 CDC37L1Q7L3B6 337 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 HDXQ7Z353 690 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 ARL10Q8N8L6 244 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 PARD6BQ9BYG5 372 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 RRP7BPQ9NSQ0 103 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 DNAI1Q9UI46 699 aa9.68□□□□□ -0.86
USP3-211ENST00000559257 CDK13Q14004 1512 aaKnown RBP9.68□□□□□ -0.86
USP3-211ENST00000559257 GRIN2AQ12879 1464 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 USP27XA6NNY8 438 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 TPPPO94811 219 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 CCDC192P0DO97 292 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 XBP1P17861 261 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 ARHGAP25P42331 645 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 KIAA0753Q2KHM9 967 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 CCDC57Q2TAC2 916 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 LRRFIP1Q32MZ4 808 aaKnown RBP9.67□□□□□ -0.86
USP3-211ENST00000559257 LONRF3Q496Y0 759 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 DRC7Q8IY82 874 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 SMYD1Q8NB12 490 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 CCDC150Q8NCX0 1101 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 TRIM58Q8NG06 486 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 CUL5Q93034 780 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 USP26Q9BXU7 913 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 RTEL1Q9NZ71 1219 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 ZNF510Q9Y2H8 683 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 MBD5Q9P267 1494 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 RASSF9O75901 435 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 SMNDC1O75940 238 aaKnown RBP eCLIP9.67□□□□□ -0.864e-9■■■□□ 17.4
USP3-211ENST00000559257 HOXA10P31260 410 aaPredicted RBP9.67□□□□□ -0.86
USP3-211ENST00000559257 CCDC38Q502W7 563 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 PANK1Q8TE04 598 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 RABGGTAQ92696 567 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 RBM42Q9BTD8 480 aaKnown RBP9.67□□□□□ -0.86
USP3-211ENST00000559257 TBC1D7Q9P0N9 293 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 FAN1Q9Y2M0 1017 aa9.67□□□□□ -0.86
USP3-211ENST00000559257 ABCC5O15440 1437 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 ARHGEF12Q9NZN5 1544 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 PSDA5PKW4 1024 aaPredicted RBP9.66□□□□□ -0.86
USP3-211ENST00000559257 GOLGA6L9A6NEM1 432 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 WDR43Q15061 677 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP3-211ENST00000559257 SNCBQ16143 134 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 ZNF394Q53GI3 561 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 SOGA3Q5TF21 947 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 FOXD4L5Q5VV16 416 aaPredicted RBP9.66□□□□□ -0.86
USP3-211ENST00000559257 YTHDF3Q7Z739 585 aaKnown RBP9.66□□□□□ -0.86
USP3-211ENST00000559257 GALNT15Q8N3T1 639 aa9.66□□□□□ -0.86
USP3-211ENST00000559257 LRRN4CLQ8ND94 238 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms