RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 COL18A1P39060 1754 aa15.17■□□□□ 0.02
LDLR-207ENST00000558013 IL15P40933 162 aaPredicted RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 RBM43Q6ZSC3 357 aaKnown RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 NKX2-3Q8TAU0 364 aa15.17■□□□□ 0.02
LDLR-207ENST00000558013 BCL11BQ9C0K0 894 aaPredicted RBP15.17■□□□□ 0.02
LDLR-207ENST00000558013 ARID5BQ14865 1188 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 CCAR1Q8IX12 1150 aaKnown RBP15.16■□□□□ 0.02
LDLR-207ENST00000558013 ZNF710Q8N1W2 664 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 STRN4Q9NRL3 753 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 PALLDQ8WX93 1383 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 SPATA31A3Q5VYP0 1347 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 RNF113AO15541 343 aaKnown RBP15.16■□□□□ 0.02
LDLR-207ENST00000558013 FDPSP14324 419 aaKnown RBP15.16■□□□□ 0.02
LDLR-207ENST00000558013 WASHC4Q2M389 1173 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 HELLSQ9NRZ9 838 aa15.16■□□□□ 0.02
LDLR-207ENST00000558013 GLI3P10071 1580 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 HSPA2P54652 639 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 CCDC144BQ3MJ40 725 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 CCDC144CPQ8IYA2 1237 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 DSCC1Q9BVC3 393 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 LMTK3Q96Q04 1460 aa15.15■□□□□ 0.02
LDLR-207ENST00000558013 PUS7LQ9H0K6 701 aaKnown RBP15.15■□□□□ 0.02
LDLR-207ENST00000558013 POLR3DP05423 398 aaPredicted RBP15.14■□□□□ 0.01
LDLR-207ENST00000558013 ZNF75DP51815 510 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 SNW1Q13573 536 aaKnown RBP15.14■□□□□ 0.01
LDLR-207ENST00000558013 GLIPR1L2Q4G1C9 344 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 GORABQ5T7V8 394 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 XAGE2Q96GT9 111 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 ZSCAN16Q9H4T2 348 aaPredicted RBP15.14■□□□□ 0.01
LDLR-207ENST00000558013 CEP126Q9P2H0 1117 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 CFAP45Q9UL16 551 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 ZAP70P43403 619 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 CCDC191Q8NCU4 936 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 TNS3Q68CZ2 1445 aa15.14■□□□□ 0.01
LDLR-207ENST00000558013 PDIA4P13667 645 aaKnown RBP15.13■□□□□ 0.01
LDLR-207ENST00000558013 ME1P48163 572 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 ZMYND15Q9H091 742 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 FGAP02671 866 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 GPTP24298 496 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 CCDC57Q2TAC2 916 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 PLA2G4DQ86XP0 818 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 AGXT2Q9BYV1 514 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 RCOR1Q9UKL0 485 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 ADAMTSL3P82987 1691 aa15.13■□□□□ 0.01
LDLR-207ENST00000558013 HMGB1P09429 215 aaKnown RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 CACTINQ8WUQ7 758 aaKnown RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 ASAP1Q9ULH1 1129 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 RFX7Q2KHR2 1363 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 RIOK3O14730 519 aaKnown RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 IQCB1Q15051 598 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 TDRD7Q8NHU6 1098 aaKnown RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 C16orf45Q96MC5 204 aaPredicted RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 SALL1Q9NSC2 1324 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 A0A1B0GVL5 298 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 TTC39AQ5SRH9 613 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 NAA16Q6N069 864 aaPredicted RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 LLPHQ9BRT6 129 aaKnown RBP15.12■□□□□ 0.01
LDLR-207ENST00000558013 KIF1AQ12756 1690 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 PCDH11XQ9BZA7 1347 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 PCDH11YQ9BZA8 1340 aa15.12■□□□□ 0.01
LDLR-207ENST00000558013 LAMA4Q16363 1823 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 ZSCAN25Q6NSZ9 544 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 CADPS2Q86UW7 1296 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 GPR108Q9NPR9 543 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 CLIP2Q9UDT6 1046 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 WDR17Q8IZU2 1322 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 CARMIL3Q8ND23 1372 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 GOLGA6L6A8MZA4 724 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 RXRAP19793 462 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 BRINP3Q76B58 766 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 DNAJC10Q8IXB1 793 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 FSIP1Q8NA03 581 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 PRIMPOLQ96LW4 560 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 CLIC4Q9Y696 253 aa15.11■□□□□ 0.01
LDLR-207ENST00000558013 PCDHA7Q9UN72 937 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 HMGN5P82970 282 aaKnown RBP15.1■□□□□ 0.01
LDLR-207ENST00000558013 HLFQ16534 295 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 ENGASEQ8NFI3 743 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 AIFM3Q96NN9 605 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 ANTXR2P58335 489 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 TCIRG1Q13488 830 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 CCDC158Q5M9N0 1113 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 ISCA1Q9BUE6 129 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 BCL2L12Q9HB09 334 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 INCENPQ9NQS7 918 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 HPS5Q9UPZ3 1129 aa15.1■□□□□ 0.01
LDLR-207ENST00000558013 KLF18A0A0U1RQI7 1052 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 ERVV-2B6SEH9 535 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 PRC1O43663 620 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 TAF7LQ5H9L4 462 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 KIF3AQ9Y496 699 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 ZNF274Q96GC6 653 aaPredicted RBP15.09■□□□□ 0.01
LDLR-207ENST00000558013 STRCP1A6NGW2 1772 aa15.09■□□□□ 0.01
LDLR-207ENST00000558013 SNAP23O00161 211 aa15.08■□□□□ 0.01
LDLR-207ENST00000558013 IL2RBP14784 551 aa15.08■□□□□ 0.01
LDLR-207ENST00000558013 NDUFA8P51970 172 aa15.08■□□□□ 0.01
LDLR-207ENST00000558013 CCDC73Q6ZRK6 1079 aa15.08■□□□□ 0.01
LDLR-207ENST00000558013 SENP2Q9HC62 589 aa15.08■□□□□ 0.01
LDLR-207ENST00000558013 GOLGA8BA8MQT2 603 aa15.08■□□□□ 0
LDLR-207ENST00000558013 KIF28PB7ZC32 967 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms