RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 DDX24Q9GZR7 859 aaKnown RBP eCLIP15□□□□□ -0.016e-14■■■□□ 16.4
SHMT2-233ENST00000557529 POLRMTO00411 1230 aaKnown RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 ZKSCAN1P17029 563 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 MCM2P49736 904 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 DDR1Q08345 913 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 GRAPQ13588 217 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 RNF20Q5VTR2 975 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 COL23A1Q86Y22 540 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 GRAPLQ8TC17 118 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 RPGRQ92834 1020 aaKnown RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 ANTXR1Q9H6X2 564 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 GNL3LQ9NVN8 582 aaKnown RBP14.99□□□□□ -0.01
SHMT2-233ENST00000557529 CASZ1Q86V15 1759 aa14.99□□□□□ -0.01
SHMT2-233ENST00000557529 TNRC6CQ9HCJ0 1690 aaKnown RBP14.98□□□□□ -0.01
SHMT2-233ENST00000557529 NECTIN1Q15223 517 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 CRY2Q49AN0 593 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 ZNF589Q86UQ0 364 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-233ENST00000557529 RBM8AQ9Y5S9 174 aaKnown RBP14.98□□□□□ -0.01
SHMT2-233ENST00000557529 SNX14Q9Y5W7 946 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 COL4A1P02462 1669 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 CD2BP2O95400 341 aaKnown RBP14.98□□□□□ -0.01
SHMT2-233ENST00000557529 NEK4P51957 841 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 CAVIN4Q5BKX8 364 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 SPATA5Q8NB90 893 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 CAMKK2Q96RR4 588 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 HMG20BQ9P0W2 317 aa14.98□□□□□ -0.01
SHMT2-233ENST00000557529 U3KPZ7 1027 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-233ENST00000557529 CYP2E1P05181 493 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-233ENST00000557529 SF3B2Q13435 895 aaKnown RBP14.97□□□□□ -0.01
SHMT2-233ENST00000557529 RASGRF1Q13972 1273 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 CREB3L3Q68CJ9 461 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 PRPF40BQ6NWY9 871 aaKnown RBP14.97□□□□□ -0.01
SHMT2-233ENST00000557529 PI16Q6UXB8 463 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 APPBP2Q92624 585 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 RBM17Q96I25 401 aaKnown RBP14.97□□□□□ -0.01
SHMT2-233ENST00000557529 TM6SF1Q9BZW5 370 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 STK32BQ9NY57 414 aa14.97□□□□□ -0.01
SHMT2-233ENST00000557529 ZNF804BA4D1E1 1349 aa14.96□□□□□ -0.01
SHMT2-233ENST00000557529 PNPLA7Q6ZV29 1317 aa14.96□□□□□ -0.01
SHMT2-233ENST00000557529 KLRG2A4D1S0 409 aaPredicted RBP14.96□□□□□ -0.02
SHMT2-233ENST00000557529 SNAP23O00161 211 aa14.96□□□□□ -0.02
SHMT2-233ENST00000557529 HSP90AA1P07900 732 aaKnown RBP14.96□□□□□ -0.02
SHMT2-233ENST00000557529 HOXA10P31260 410 aaPredicted RBP14.96□□□□□ -0.02
SHMT2-233ENST00000557529 BCAMP50895 628 aa14.96□□□□□ -0.02
SHMT2-233ENST00000557529 UBE3CQ15386 1083 aa14.96□□□□□ -0.02
SHMT2-233ENST00000557529 SEC62Q99442 399 aaKnown RBP14.96□□□□□ -0.02
SHMT2-233ENST00000557529 DSCC1Q9BVC3 393 aa14.96□□□□□ -0.02
SHMT2-233ENST00000557529 AKAP11Q9UKA4 1901 aa14.96□□□□□ -0.02
SHMT2-233ENST00000557529 MAST3O60307 1309 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 A0A1B0GUL6 1792 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 SLC27A2O14975 620 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 SEMA3EO15041 775 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 ZBTB22O15209 634 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 PSMA5P28066 241 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 KRT32Q14532 448 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 WASHC4Q2M389 1173 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 TSGA10IPQ3SY00 556 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 CCDC129Q6ZRS4 1044 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 VPS37DQ86XT2 251 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 RASEFQ8IZ41 740 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 CRAMP1Q96RY5 1269 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 BRIP1Q9BX63 1249 aa14.95□□□□□ -0.02
SHMT2-233ENST00000557529 SLKQ9H2G2 1235 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-233ENST00000557529 PIH1D3Q9NQM4 214 aaKnown RBP14.95□□□□□ -0.02
SHMT2-233ENST00000557529 IDH1O75874 414 aaKnown RBP14.94□□□□□ -0.02
SHMT2-233ENST00000557529 BBOX1O75936 387 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 ADD2P35612 726 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 BAG6P46379 1132 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 EN1Q05925 392 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-233ENST00000557529 MAP3K12Q12852 859 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 EZH2Q15910 746 aaKnown RBP14.94□□□□□ -0.02
SHMT2-233ENST00000557529 SLC15A2Q16348 729 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 TMC4Q7Z404 712 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 LEMD3Q9Y2U8 911 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 PARP3Q9Y6F1 533 aa14.94□□□□□ -0.02
SHMT2-233ENST00000557529 TAF1P21675 1872 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 M0R2C6 588 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 CHGBP05060 677 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 GYG1P46976 350 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 SLC9C2Q5TAH2 1124 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 FBXO33Q7Z6M2 555 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 OSBP2Q969R2 916 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 JAKMIP1Q96N16 626 aaKnown RBP14.93□□□□□ -0.02
SHMT2-233ENST00000557529 UPF3BQ9BZI7 483 aaKnown RBP14.93□□□□□ -0.02
SHMT2-233ENST00000557529 CHMP5Q9NZZ3 219 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 DENND2AQ9ULE3 1009 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 XDHP47989 1333 aa14.93□□□□□ -0.02
SHMT2-233ENST00000557529 PDS5AQ29RF7 1337 aaKnown RBP14.93□□□□□ -0.02
SHMT2-233ENST00000557529 NRXN2Q9P2S2 1712 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 MMP10P09238 476 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 PDE6AP16499 860 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 SPRYD3Q8NCJ5 442 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 FAM84BQ96KN1 310 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-233ENST00000557529 ZSWIM6Q9HCJ5 1215 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 ANKIB1Q9P2G1 1089 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 CTNNA3Q9UI47 895 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 CIZ1Q9ULV3 898 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-233ENST00000557529 CYP46A1Q9Y6A2 500 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 EP400Q96L91 3159 aa14.92□□□□□ -0.02
SHMT2-233ENST00000557529 HSPD1P10809 573 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms