RNA–Protein interactions for RNA: ENST00000557517.1

PSMC6-215, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-215	ENST00000557517	UBE3B	Q7Z3V4	1068 aa		13.51	□□□□□ -0.25
PSMC6-215	ENST00000557517	BCL2L13	Q9BXK5	485 aa		13.51	□□□□□ -0.25
PSMC6-215	ENST00000557517	GREM2	Q9H772	168 aa		13.51	□□□□□ -0.25
PSMC6-215	ENST00000557517	GGA1	Q9UJY5	639 aa		13.51	□□□□□ -0.25
PSMC6-215	ENST00000557517	MINPP1	Q9UNW1	487 aa		13.51	□□□□□ -0.25
PSMC6-215	ENST00000557517	DUOX1	Q9NRD9	1551 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	XDH	P47989	1333 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	ECE2	O60344	883 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	ATP2B4	P23634	1241 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	BEND3	Q5T5X7	828 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	LTBP1	Q14766	1721 aa		13.5	□□□□□ -0.25
PSMC6-215	ENST00000557517	WTIP	A6NIX2	430 aa	Predicted RBP	13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	UFL1	O94874	794 aa		13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	FMR1	Q06787	632 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	PODN	Q7Z5L7	613 aa		13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	MICALL2	Q8IY33	904 aa		13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	GPR101	Q96P66	508 aa	Predicted RBP	13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	ABT1	Q9ULW3	272 aa	Known RBP	13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	COL4A1	P02462	1669 aa		13.49	□□□□□ -0.25
PSMC6-215	ENST00000557517	SHTN1	A0MZ66	631 aa		13.48	□□□□□ -0.25
PSMC6-215	ENST00000557517	TRAF5	O00463	557 aa		13.48	□□□□□ -0.25
PSMC6-215	ENST00000557517	FOXO4	P98177	505 aa		13.48	□□□□□ -0.25
PSMC6-215	ENST00000557517	CDC37L1	Q7L3B6	337 aa		13.48	□□□□□ -0.25
PSMC6-215	ENST00000557517	RASEF	Q8IZ41	740 aa		13.48	□□□□□ -0.25
PSMC6-215	ENST00000557517	DDX60	Q8IY21	1712 aa	Known RBP	13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	CCDC85C	A6NKD9	419 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517		F6X3S4	739 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	ITGA6	P23229	1130 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	SAMD7	Q7Z3H4	446 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	TRPM4	Q8TD43	1214 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	CAPNS2	Q96L46	248 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517	LEMD3	Q9Y2U8	911 aa		13.47	□□□□□ -0.25
PSMC6-215	ENST00000557517		G3V3G9	751 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	EGFR	P00533	1210 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	IGHMBP2	P38935	993 aa	Known RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	ECE1	P42892	770 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	CCT4	P50991	539 aa	Known RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	ATN1	P54259	1190 aa	Predicted RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	ZNF280A	P59817	542 aa	Predicted RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	DCAF8	Q5TAQ9	597 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	AGBL3	Q8NEM8	1001 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	GML	Q99445	158 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	TLL2	Q9Y6L7	1015 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	LRRC37A	A6NMS7	1700 aa		13.46	□□□□□ -0.25
PSMC6-215	ENST00000557517	LAMB2	P55268	1798 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	CASP8AP2	Q9UKL3	1982 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	MAP3K13	O43283	966 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	SAPCD2	Q86UD0	394 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	HHIPL1	Q96JK4	782 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	ANKRD2	Q9GZV1	360 aa		13.45	□□□□□ -0.26
PSMC6-215	ENST00000557517	USP17L3	A6NCW0	530 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	USP17L4	A6NCW7	530 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517		E9PSI1	815 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	GRM8	O00222	908 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	ALDH1L1	O75891	902 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	SLFN5	Q08AF3	891 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	USP17L1	Q7RTZ2	530 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	MPHOSPH8	Q99549	860 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	BEGAIN	Q9BUH8	593 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	COA1	Q9GZY4	146 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	MED23	Q9ULK4	1368 aa		13.44	□□□□□ -0.26
PSMC6-215	ENST00000557517	TNRC18	O15417	2968 aa	Predicted RBP	13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	ANKRD18B	A2A2Z9	1011 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	ZNF609	O15014	1411 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	MAP2K2	P36507	400 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	GRM1	Q13255	1194 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	RBM26	Q5T8P6	1007 aa	Known RBP	13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	CYP4F22	Q6NT55	531 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	MAMSTR	Q6ZN01	415 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	USP48	Q86UV5	1035 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	TXNRD3	Q86VQ6	643 aa		13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	TRMT2A	Q8IZ69	625 aa	Known RBP	13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	MRPL50	Q8N5N7	158 aa	Known RBP	13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.43	□□□□□ -0.26
PSMC6-215	ENST00000557517	ZNF804B	A4D1E1	1349 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	CCER2	I3L3R5	266 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	CELF2	O95319	508 aa	Known RBP	13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	USP17L8	P0C7I0	530 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	MMP14	P50281	582 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	CHRND	Q07001	517 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	IFIT5	Q13325	482 aa	Known RBP	13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	EPHA10	Q5JZY3	1008 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	DACT2	Q5SW24	774 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	STRIP1	Q5VSL9	837 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	LMBR1L	Q6UX01	489 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	C15orf52	Q6ZUT6	534 aa	Known RBP	13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	DCPS	Q96C86	337 aa	Known RBP	13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	SRCIN1	Q9C0H9	1055 aa		13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.42	□□□□□ -0.26
PSMC6-215	ENST00000557517	UTY	O14607	1347 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	CA12	O43570	354 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	KIF4B	Q2VIQ3	1234 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	DLK2	Q6UY11	383 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	KRT26	Q7Z3Y9	468 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	KAZALD1	Q96I82	304 aa		13.41	□□□□□ -0.26
PSMC6-215	ENST00000557517	MCOLN1	Q9GZU1	580 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms