RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PPARD	Q03181	441 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	DCAF8	Q5TAQ9	597 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	OSCAR	Q8IYS5	282 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	NCOA7	Q8NI08	942 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	BAG1	Q99933	345 aa	Predicted RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZHX3	Q9H4I2	956 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	PAG1	Q9NWQ8	432 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	PRC1	O43663	620 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	FANCC	Q00597	558 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	FAM160A1	Q05DH4	1040 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	DNAJC21	Q5F1R6	531 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	HDX	Q7Z353	690 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	MAATS1	Q7Z4T9	603 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	TAX1BP1	Q86VP1	789 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	DHX58	Q96C10	678 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	NACAP1	Q9BZK3	213 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	FAM107B	Q9H098	131 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CHD1	O14646	1710 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	MINDY4B	A8MYZ0	360 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	IFIT3	O14879	490 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	SAMD1	Q6SPF0	538 aa	Predicted RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	MTMR6	Q9Y217	621 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	EDC4	Q6P2E9	1401 aa	Known RBP	5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	SSH2	Q76I76	1423 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	UHRF1BP1L	A0JNW5	1464 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	CAVIN2	O95810	425 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	CCDC102B	Q68D86	513 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	KCNF1	Q9H3M0	494 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	STRN4	Q9NRL3	753 aa		5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	5.71	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZFYVE16	Q7Z3T8	1539 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005		A0A087WZG4	1122 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC175	P0C221	793 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	USP8	P40818	1118 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	ADCK5	Q3MIX3	580 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	LRRC7	Q96NW7	1537 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005		A0A1B0GUL7	405 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	MTX1	Q13505	466 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	ERCC6L	Q2NKX8	1250 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	LRRC59	Q96AG4	307 aa	Known RBP	5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	MYO6	Q9UM54	1294 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	GUCA1B	Q9UMX6	200 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZC3H13	Q5T200	1668 aa	Known RBP	5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	SLC39A6	Q13433	755 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	UBE3B	Q7Z3V4	1068 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	XPO4	Q9C0E2	1151 aa	Known RBP	5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	CEP126	Q9P2H0	1117 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZDHHC9	Q9Y397	364 aa		5.71	□□□□□ -1.5
SYNE2-223	ENST00000557005	ARHGEF40	Q8TER5	1519 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCT6A	P40227	531 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	IARS	P41252	1262 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ARID5B	Q14865	1188 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZNF215	Q9UL58	517 aa	Predicted RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	AKAP2	Q9Y2D5	859 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	MROH2A	A6NES4	1674 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	GRM8	O00222	908 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	RNF113A	O15541	343 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	NCBP1	Q09161	790 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC96	Q2M329	555 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	FKBP15	Q5T1M5	1219 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	AFAP1L1	Q8TED9	768 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	TAF4B	Q92750	862 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	SUCLG2	Q96I99	432 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CCDC113	Q9H0I3	377 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZBTB3	Q9H5J0	574 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CAMSAP1	Q5T5Y3	1602 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	USP27X	A6NNY8	438 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZBTB22	O15209	634 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ERLIN2	O94905	339 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	MNAT1	P51948	309 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ADK	P55263	362 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ZC3H6	P61129	1189 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	UBXN1	Q04323	297 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	MICALCL	Q6ZW33	695 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	XAGE3	Q8WTP9	111 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	EYA1	Q99502	592 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ELP1	O95163	1332 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	ARHGEF10	O15013	1369 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	COBL	O75128	1261 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	NAPB	Q9H115	298 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	LRP2BP	Q9P2M1	347 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CLIC4	Q9Y696	253 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	SBNO2	Q9Y2G9	1366 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	POGZ	Q7Z3K3	1410 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005		A0A0D9SFI3	127 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	NBPF7	P0C2Y1	421 aa	Predicted RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	CALR	P27797	417 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	NLRP5	P59047	1200 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	GPIHBP1	Q8IV16	184 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	SEC62	Q99442	399 aa	Known RBP	5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	IMPACT	Q9P2X3	320 aa		5.7	□□□□□ -1.5
SYNE2-223	ENST00000557005	AKR1B15	C9JRZ8	316 aa	Predicted RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	CHL1	O00533	1208 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	ADCY9	O60503	1353 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	HOXC9	P31274	260 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	MYOM1	P52179	1685 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	CHMP4BP1	P59074	171 aa		5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	CT47A1	Q5JQC4	288 aa	Predicted RBP	5.69	□□□□□ -1.5
SYNE2-223	ENST00000557005	KSR2	Q6VAB6	950 aa		5.69	□□□□□ -1.5

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