RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RTCBQ9Y3I0 505 aaKnown RBP31.51■■■□□ 2.64
CCDC88C-205ENST00000553403 UQCRFS1P1P0C7P4 283 aa31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 ZAP70P43403 619 aa31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 SF3B3Q15393 1217 aaKnown RBP31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 SLC10A5Q5PT55 438 aa31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 BCL11BQ9C0K0 894 aaPredicted RBP31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 ALDH8A1Q9H2A2 487 aaPredicted RBP31.51■■■□□ 2.63
CCDC88C-205ENST00000553403 TAF1LQ8IZX4 1826 aa31.5■■■□□ 2.63
CCDC88C-205ENST00000553403 SLC5A1P13866 664 aa31.5■■■□□ 2.63
CCDC88C-205ENST00000553403 GSE1Q14687 1217 aa31.5■■■□□ 2.63
CCDC88C-205ENST00000553403 ZSCAN31Q96LW9 406 aaPredicted RBP31.5■■■□□ 2.63
CCDC88C-205ENST00000553403 ARID4AP29374 1257 aaPredicted RBP31.49■■■□□ 2.63
CCDC88C-205ENST00000553403 ERFEQ4G0M1 354 aa31.49■■■□□ 2.63
CCDC88C-205ENST00000553403 TBC1D9BQ66K14 1250 aa31.49■■■□□ 2.63
CCDC88C-205ENST00000553403 CDC5LQ99459 802 aaKnown RBP31.49■■■□□ 2.63
CCDC88C-205ENST00000553403 NYXQ9GZU5 481 aa31.49■■■□□ 2.63
CCDC88C-205ENST00000553403 ZPR1O75312 459 aa31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 CPA1P15085 419 aa31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 MCAMP43121 646 aa31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 EN1Q05925 392 aaPredicted RBP31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 TTF1Q15361 905 aaPredicted RBP31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 BLOC1S2Q6QNY1 142 aa31.48■■■□□ 2.63
CCDC88C-205ENST00000553403 MAST3O60307 1309 aa31.47■■■□□ 2.63
CCDC88C-205ENST00000553403 CCDC102BQ68D86 513 aa31.47■■■□□ 2.63
CCDC88C-205ENST00000553403 SH2B1Q9NRF2 756 aaPredicted RBP31.47■■■□□ 2.63
CCDC88C-205ENST00000553403 COL24A1Q17RW2 1714 aa31.47■■■□□ 2.63
CCDC88C-205ENST00000553403 AKAP11Q9UKA4 1901 aa31.46■■■□□ 2.63
CCDC88C-205ENST00000553403 RPS6KB1P23443 525 aa31.45■■■□□ 2.63
CCDC88C-205ENST00000553403 SETDB2Q96T68 719 aa31.45■■■□□ 2.63
CCDC88C-205ENST00000553403 SRP68Q9UHB9 627 aaKnown RBP31.45■■■□□ 2.63
CCDC88C-205ENST00000553403 C4BP0C0L5 1744 aa31.45■■■□□ 2.63
CCDC88C-205ENST00000553403 ANKRD1Q15327 319 aa31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 ZSCAN25Q6NSZ9 544 aa31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 HELBQ8NG08 1087 aaPredicted RBP31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 DDX24Q9GZR7 859 aaKnown RBP eCLIP31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 BAG4O95429 457 aaKnown RBP31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 APBA3O96018 575 aa31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 SLFNL1Q499Z3 407 aa31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 APPBP2Q92624 585 aa31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 ARHGEF1Q92888 912 aaKnown RBP31.44■■■□□ 2.62
CCDC88C-205ENST00000553403 PHKA1P46020 1223 aa31.43■■■□□ 2.62
CCDC88C-205ENST00000553403 BICDL1Q6ZP65 573 aa31.43■■■□□ 2.62
CCDC88C-205ENST00000553403 OSBP2Q969R2 916 aa31.43■■■□□ 2.62
CCDC88C-205ENST00000553403 ZDHHC9Q9Y397 364 aa31.43■■■□□ 2.62
CCDC88C-205ENST00000553403 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.43■■■□□ 2.62
CCDC88C-205ENST00000553403 GOLGA6L22H0YM25 854 aa31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 M0R2C6 588 aa31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 HSPD1P10809 573 aaKnown RBP31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 PKP1Q13835 747 aa31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 SMIM5Q71RC9 77 aa31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 TAF6LQ9Y6J9 622 aa31.42■■■□□ 2.62
CCDC88C-205ENST00000553403 TRAK2O60296 914 aa31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 GTF2E1P29083 439 aaPredicted RBP31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 CYP21A2P08686 494 aa31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 PI16Q6UXB8 463 aa31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 ANKRD18AQ8IVF6 992 aa31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 NEK1Q96PY6 1258 aa31.41■■■□□ 2.62
CCDC88C-205ENST00000553403 MYH7P12883 1935 aa31.4■■■□□ 2.62
CCDC88C-205ENST00000553403 BRD1O95696 1058 aa31.4■■■□□ 2.62
CCDC88C-205ENST00000553403 CHRNDQ07001 517 aa31.39■■■□□ 2.62
CCDC88C-205ENST00000553403 WASHC4Q2M389 1173 aa31.39■■■□□ 2.62
CCDC88C-205ENST00000553403 TRAPPC3LQ5T215 181 aa31.39■■■□□ 2.62
CCDC88C-205ENST00000553403 C3orf67Q6ZVT6 689 aa31.39■■■□□ 2.62
CCDC88C-205ENST00000553403 SKOR2Q2VWA4 1001 aaPredicted RBP31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 NBPF5PQ86XG9 351 aaPredicted RBP31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 TNS1Q9HBL0 1735 aaKnown RBP31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 ADRA2BP18089 450 aa31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 ADD2P35612 726 aa31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 TPTE2Q6XPS3 522 aa31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 BSDC1Q9NW68 430 aaPredicted RBP31.38■■■□□ 2.61
CCDC88C-205ENST00000553403 HMGB1P09429 215 aaKnown RBP31.37■■■□□ 2.61
CCDC88C-205ENST00000553403 RFC4P35249 363 aa31.37■■■□□ 2.61
CCDC88C-205ENST00000553403 CASZ1Q86V15 1759 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 LARGE1O95461 756 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 UBE3CQ15386 1083 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 EZH2Q15910 746 aaKnown RBP31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 AMIGO3Q86WK7 504 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 LARP6Q9BRS8 491 aaKnown RBP31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 PIH1D3Q9NQM4 214 aaKnown RBP31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 CTNNA3Q9UI47 895 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 C4AP0C0L4 1744 aa31.36■■■□□ 2.61
CCDC88C-205ENST00000553403 SPATA5Q8NB90 893 aa31.35■■■□□ 2.61
CCDC88C-205ENST00000553403 NLRP3Q96P20 1036 aa31.35■■■□□ 2.61
CCDC88C-205ENST00000553403 SLC27A3Q5K4L6 730 aa31.35■■■□□ 2.61
CCDC88C-205ENST00000553403 LRRC4BQ9NT99 713 aa31.35■■■□□ 2.61
CCDC88C-205ENST00000553403 ME3Q16798 604 aa31.34■■■□□ 2.61
CCDC88C-205ENST00000553403 TPCN1Q9ULQ1 816 aa31.34■■■□□ 2.61
CCDC88C-205ENST00000553403 SMC3Q9UQE7 1217 aa31.34■■■□□ 2.61
CCDC88C-205ENST00000553403 COL4A1P02462 1669 aa31.33■■■□□ 2.61
CCDC88C-205ENST00000553403 TOB2Q14106 344 aaPredicted RBP31.33■■■□□ 2.61
CCDC88C-205ENST00000553403 COL9A3Q14050 684 aaPredicted RBP31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 UBE4AQ14139 1066 aa31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 SLC9C2Q5TAH2 1124 aa31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 CCDC83Q8IWF9 413 aa31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 PUS7LQ9H0K6 701 aaKnown RBP31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 WDR33Q9C0J8 1336 aaKnown RBP31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 RASGRF1Q13972 1273 aa31.32■■■□□ 2.6
CCDC88C-205ENST00000553403 A0A1B0GUL6 1792 aa31.31■■■□□ 2.6
CCDC88C-205ENST00000553403 SNAP23O00161 211 aa31.31■■■□□ 2.6
CCDC88C-205ENST00000553403 STOX1Q6ZVD7 989 aa31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms