RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CRELD1Q96HD1 420 aa7.89□□□□□ -1.15
SCFD1-209ENST00000553280 TGIF2Q9GZN2 237 aa7.89□□□□□ -1.15
SCFD1-209ENST00000553280 ZFYVE28Q9HCC9 887 aa7.89□□□□□ -1.15
SCFD1-209ENST00000553280 KCNMB2Q9Y691 235 aa7.89□□□□□ -1.15
SCFD1-209ENST00000553280 UBAP1LF5GYI3 381 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 FAM229AH3BQW9 127 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 EIF4BP23588 611 aaKnown RBP7.88□□□□□ -1.15
SCFD1-209ENST00000553280 CHRNA4P43681 627 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 TRIP4Q15650 581 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-209ENST00000553280 CD163Q86VB7 1156 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 CMTR1Q8N1G2 835 aaKnown RBP7.88□□□□□ -1.15
SCFD1-209ENST00000553280 SNX29Q8TEQ0 813 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 NUDT8Q8WV74 236 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 CCDC74AQ96AQ1 378 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 ELP3Q9H9T3 547 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 C11orf16Q9NQ32 467 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 DNAJB12Q9NXW2 375 aaKnown RBP7.88□□□□□ -1.15
SCFD1-209ENST00000553280 FOXD3Q9UJU5 478 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-209ENST00000553280 SLC6A14Q9UN76 642 aa7.88□□□□□ -1.15
SCFD1-209ENST00000553280 TARSP26639 723 aaKnown RBP7.87□□□□□ -1.15
SCFD1-209ENST00000553280 COL9A3Q14050 684 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-209ENST00000553280 USPL1Q5W0Q7 1092 aa7.87□□□□□ -1.15
SCFD1-209ENST00000553280 SASH3O75995 380 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 C20orf204Q6ZNR8 217 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 SLC43A3Q8NBI5 491 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 EPS8L3Q8TE67 593 aaKnown RBP7.86□□□□□ -1.15
SCFD1-209ENST00000553280 OSBPL7Q9BZF2 842 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 C12orf49Q9H741 205 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 EFCC1Q9HA90 598 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 NLRP2Q9NX02 1062 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 ZFATQ9P243 1243 aa7.86□□□□□ -1.15
SCFD1-209ENST00000553280 LILRB5O75023 590 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 PHACTR2O75167 634 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 EGFRP00533 1210 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 SPATA31C1P0DKV0 1188 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 RARAP10276 462 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 NID1P14543 1247 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 BAG6P46379 1132 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 PSAPL1Q6NUJ1 521 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 UBXN4Q92575 508 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 JPH1Q9HDC5 661 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-209ENST00000553280 TMEM63CQ9P1W3 806 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 NAGPAQ9UK23 515 aa7.85□□□□□ -1.15
SCFD1-209ENST00000553280 SPDYE3A6NKU9 549 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 XYLBO75191 536 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 MLLT1Q03111 559 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-209ENST00000553280 PRRT3Q5FWE3 981 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 TRAPPC3LQ5T215 181 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 PI16Q6UXB8 463 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 CCSER2Q9H7U1 834 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 PRDM6Q9NQX0 595 aa7.84□□□□□ -1.15
SCFD1-209ENST00000553280 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-209ENST00000553280 USP31Q70CQ4 1352 aa7.84□□□□□ -1.16
SCFD1-209ENST00000553280 CPB1P15086 417 aa7.83□□□□□ -1.16
SCFD1-209ENST00000553280 PTPN12Q05209 780 aaKnown RBP7.83□□□□□ -1.16
SCFD1-209ENST00000553280 DHX32Q7L7V1 743 aaKnown RBP7.83□□□□□ -1.16
SCFD1-209ENST00000553280 FAM35AQ86V20 835 aa7.83□□□□□ -1.16
SCFD1-209ENST00000553280 PMEPA1Q969W9 287 aa7.83□□□□□ -1.16
SCFD1-209ENST00000553280 TINF2Q9BSI4 451 aa7.83□□□□□ -1.16
SCFD1-209ENST00000553280 SRCIN1Q9C0H9 1055 aa7.83□□□□□ -1.16
SCFD1-209ENST00000553280 PPP1R1BQ9UD71 204 aaPredicted RBP7.83□□□□□ -1.16
SCFD1-209ENST00000553280 ZBTB42B2RXF5 422 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 FURINP09958 794 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 TRIM28Q13263 835 aaKnown RBP7.82□□□□□ -1.16
SCFD1-209ENST00000553280 TAF1CQ15572 869 aaPredicted RBP7.82□□□□□ -1.16
SCFD1-209ENST00000553280 NLRP13Q86W25 1043 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 GALNT12Q8IXK2 581 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 CHRDQ9H2X0 955 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 ACBD3Q9H3P7 528 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 ABI2Q9NYB9 513 aaPredicted RBP7.82□□□□□ -1.16
SCFD1-209ENST00000553280 CNTN3Q9P232 1028 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 FAM8A1Q9UBU6 413 aa7.82□□□□□ -1.16
SCFD1-209ENST00000553280 DDX41Q9UJV9 622 aaKnown RBP7.82□□□□□ -1.16
SCFD1-209ENST00000553280 RGS9O75916 674 aaPredicted RBP7.81□□□□□ -1.16
SCFD1-209ENST00000553280 APBA3O96018 575 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 ST13P50502 369 aaKnown RBP7.81□□□□□ -1.16
SCFD1-209ENST00000553280 GRIK4Q16099 956 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 HFE2Q6ZVN8 426 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 ZNF654Q8IZM8 581 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 C1orf127Q8N9H9 656 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 CAPN10Q9HC96 672 aa7.81□□□□□ -1.16
SCFD1-209ENST00000553280 EREGO14944 169 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 ADAM23O75077 832 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 MAP3K6O95382 1288 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 POLR3DP05423 398 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-209ENST00000553280 AFF1P51825 1210 aaKnown RBP7.8□□□□□ -1.16
SCFD1-209ENST00000553280 GNL2Q13823 731 aaKnown RBP7.8□□□□□ -1.16
SCFD1-209ENST00000553280 TTC39BQ5VTQ0 682 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-209ENST00000553280 NXPE4Q6UWF7 544 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 HS2ST1Q7LGA3 356 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 BCO2Q9BYV7 579 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 SRA1Q9HD15 236 aaKnown RBP7.8□□□□□ -1.16
SCFD1-209ENST00000553280 NPHS2Q9NP85 383 aa7.8□□□□□ -1.16
SCFD1-209ENST00000553280 GATA4P43694 442 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 RACK1P63244 317 aaKnown RBP7.79□□□□□ -1.16
SCFD1-209ENST00000553280 PLAURQ03405 335 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 DOC2BQ14184 412 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 PERM1Q5SV97 790 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 ELMSAN1Q6PJG2 1045 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 TRPM4Q8TD43 1214 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms