RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TRIM5Q9C035 493 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 GOLPH3LQ9H4A5 285 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 C19orf44Q9H6X5 657 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 SH3TC1Q8TE82 1336 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 KAT6BQ8WYB5 2073 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 E7EWF7 191 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 H7C1W4 665 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 M0R2C6 588 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 PFKFB2O60825 505 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 HSPD1P10809 573 aaKnown RBP8.83□□□□□ -1
LIMA1-213ENST00000552720 CCDC144BQ3MJ40 725 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 HSP90AB3PQ58FF7 597 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 C11orf57Q6ZUT1 292 aaPredicted RBP8.83□□□□□ -1
LIMA1-213ENST00000552720 DHX32Q7L7V1 743 aaKnown RBP8.83□□□□□ -1
LIMA1-213ENST00000552720 CCDC144CPQ8IYA2 1237 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 MAST3O60307 1309 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 PALLDQ8WX93 1383 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 MYH7P12883 1935 aa8.83□□□□□ -1
LIMA1-213ENST00000552720 A0A1B0GUL7 405 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 RIOK3O14730 519 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 ZNF75DP51815 510 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 HAND2P61296 217 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 HMGN5P82970 282 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 EXOSC10Q01780 885 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 ILDR1Q86SU0 546 aaPredicted RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 PLA2G4DQ86XP0 818 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 RAB11FIP4Q86YS3 637 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 FBXW7Q969H0 707 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.82□□□□□ -12e-8■■■■■ 37.9
LIMA1-213ENST00000552720 RFX7Q2KHR2 1363 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 MST1RQ04912 1400 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 UBR2Q8IWV8 1755 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 IFIT1P09914 478 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 PDIA4P13667 645 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 ARID5BQ14865 1188 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 OTUD7BQ6GQQ9 843 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 CCAR1Q8IX12 1150 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 TDRD7Q8NHU6 1098 aaKnown RBP8.82□□□□□ -1
LIMA1-213ENST00000552720 MAP7D2Q96T17 732 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 BCL2L12Q9HB09 334 aa8.82□□□□□ -1
LIMA1-213ENST00000552720 GOLGA6L6A8MZA4 724 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 ADORA1P30542 326 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 GTF2F1P35269 517 aaKnown RBP eCLIP8.81□□□□□ -1
LIMA1-213ENST00000552720 FKBP4Q02790 459 aaKnown RBP eCLIP8.81□□□□□ -1
LIMA1-213ENST00000552720 ZMYM1Q5SVZ6 1142 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 BCL11BQ9C0K0 894 aaPredicted RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 GJB4Q9NTQ9 266 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 CWC25Q9NXE8 425 aaPredicted RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 ATF3P18847 181 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 PDIA3P30101 505 aaKnown RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 SNW1Q13573 536 aaKnown RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 IQCB1Q15051 598 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 TMEM132AQ24JP5 1023 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 ZSCAN25Q6NSZ9 544 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 CACTINQ8WUQ7 758 aaKnown RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 OSBP2Q969R2 916 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 C16orf45Q96MC5 204 aaPredicted RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 ZSCAN16Q9H4T2 348 aaPredicted RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 HELLSQ9NRZ9 838 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 CFAP45Q9UL16 551 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 ZNF330Q9Y3S2 320 aaPredicted RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 KIF3AQ9Y496 699 aa8.81□□□□□ -1
LIMA1-213ENST00000552720 PARP4Q9UKK3 1724 aaKnown RBP8.81□□□□□ -1
LIMA1-213ENST00000552720 EYA2O00167 538 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 FOXP2O15409 715 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 FDPSP14324 419 aaKnown RBP8.8□□□□□ -1
LIMA1-213ENST00000552720 SCARF1Q14162 830 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 PI16Q6UXB8 463 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 KLHL34Q8N239 644 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 DSCC1Q9BVC3 393 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 PRDM10Q9NQV6 1147 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 RCOR1Q9UKL0 485 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 SALL1Q9NSC2 1324 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 TMEM94Q12767 1356 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 CARMIL3Q8ND23 1372 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 RNF113AO15541 343 aaKnown RBP8.8□□□□□ -1
LIMA1-213ENST00000552720 TPM3P06753 285 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 IL15P40933 162 aaPredicted RBP8.8□□□□□ -1
LIMA1-213ENST00000552720 AGXT2Q9BYV1 514 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 CLIP2Q9UDT6 1046 aa8.8□□□□□ -1
LIMA1-213ENST00000552720 DDX60Q8IY21 1712 aaKnown RBP8.8□□□□□ -1
LIMA1-213ENST00000552720 KCPQ6ZWJ8 1503 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 HMGB1P09429 215 aaKnown RBP8.79□□□□□ -1
LIMA1-213ENST00000552720 ME1P48163 572 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 NAA16Q6N069 864 aaPredicted RBP8.79□□□□□ -1
LIMA1-213ENST00000552720 HOMEZQ8IX15 550 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 NKX2-3Q8TAU0 364 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 LLPHQ9BRT6 129 aaKnown RBP8.79□□□□□ -1
LIMA1-213ENST00000552720 DENND2AQ9ULE3 1009 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 AKAP11Q9UKA4 1901 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 SHANK3Q9BYB0 1731 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 A0A1B0GVL5 298 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 SYNE4Q8N205 404 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 FSIP1Q8NA03 581 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 ENGASEQ8NFI3 743 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 TNS3Q68CZ2 1445 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 SPEF2Q9C093 1822 aa8.79□□□□□ -1
LIMA1-213ENST00000552720 USP27XA6NNY8 438 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 POLR3DP05423 398 aaPredicted RBP8.78□□□□□ -1
LIMA1-213ENST00000552720 NAA30Q147X3 362 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 197 ms