RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RTN1Q16799 776 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 MRPS27Q92552 414 aaKnown RBP18.82■□□□□ 0.6
CUX1-213ENST00000549414 CCDC194A0A1B0GVG4 234 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 ALKQ9UM73 1620 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 MBD4O95243 580 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 CCP110O43303 1012 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 TOP1P11387 765 aaKnown RBP18.81■□□□□ 0.6
CUX1-213ENST00000549414 CLCN1P35523 988 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 UVSSAQ2YD98 709 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 MTERF4Q7Z6M4 381 aaKnown RBP18.81■□□□□ 0.6
CUX1-213ENST00000549414 TMX1Q9H3N1 280 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 SEC63Q9UGP8 760 aaKnown RBP18.81■□□□□ 0.6
CUX1-213ENST00000549414 B4E1Z4 1266 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 TNNT1P13805 278 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 CRACR2BQ8N4Y2 399 aaPredicted RBP18.81■□□□□ 0.6
CUX1-213ENST00000549414 ZNHIT6Q9NWK9 470 aaKnown RBP18.81■□□□□ 0.6
CUX1-213ENST00000549414 TMOD2Q9NZR1 351 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 KDRP35968 1356 aa18.81■□□□□ 0.6
CUX1-213ENST00000549414 CCDC102BQ68D86 513 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 TMEM63CQ9P1W3 806 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 TULP4Q9NRJ4 1543 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 ME3Q16798 604 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 LUZP1Q86V48 1076 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 ESR2Q92731 530 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 ZAP70P43403 619 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 RRAGDQ9NQL2 400 aaPredicted RBP18.8■□□□□ 0.6
CUX1-213ENST00000549414 GPAA1O43292 621 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 CDC37L1Q7L3B6 337 aa18.8■□□□□ 0.6
CUX1-213ENST00000549414 SH3TC1Q8TE82 1336 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 ABCA9Q8IUA7 1624 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 F8W031 263 aaPredicted RBP18.79■□□□□ 0.6
CUX1-213ENST00000549414 CCDC96Q2M329 555 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 LRRC24Q50LG9 513 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 KRT23Q9C075 422 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 ZNF287Q9HBT7 754 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 SPTLC2O15270 562 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 PDE4BQ07343 736 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 AOPEPQ8N6M6 819 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 HELLSQ9NRZ9 838 aa18.79■□□□□ 0.6
CUX1-213ENST00000549414 EIF5P55010 431 aaKnown RBP18.79■□□□□ 0.6
CUX1-213ENST00000549414 IFIT1BQ5T764 474 aaKnown RBP18.79■□□□□ 0.6
CUX1-213ENST00000549414 CRNKL1Q9BZJ0 848 aaKnown RBP18.79■□□□□ 0.6
CUX1-213ENST00000549414 PPRC1Q5VV67 1664 aaKnown RBP18.79■□□□□ 0.6
CUX1-213ENST00000549414 BRD1O95696 1058 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 ADCK5Q3MIX3 580 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 KCNG4Q8TDN1 519 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 KAT14Q9H8E8 782 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 AFMP43652 599 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 DEF6Q9H4E7 631 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 ANTXR1Q9H6X2 564 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 QRICH2Q9H0J4 1663 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 A0A1B0GVL5 298 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 ATP5JP18859 108 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 ZKSCAN5Q9Y2L8 839 aa18.78■□□□□ 0.6
CUX1-213ENST00000549414 PRM3Q9NNZ6 103 aa18.77■□□□□ 0.6
CUX1-213ENST00000549414 ERBB3P21860 1342 aa18.77■□□□□ 0.6
CUX1-213ENST00000549414 MYL10Q9BUA6 226 aa18.77■□□□□ 0.6
CUX1-213ENST00000549414 ARMT1Q9H993 441 aa18.77■□□□□ 0.6
CUX1-213ENST00000549414 LMOD1P29536 600 aaPredicted RBP18.77■□□□□ 0.59
CUX1-213ENST00000549414 SMARCC1Q92922 1105 aaPredicted RBP18.77■□□□□ 0.59
CUX1-213ENST00000549414 TFCP2L1Q9NZI6 479 aa18.77■□□□□ 0.59
CUX1-213ENST00000549414 MAGEB6P1A0A0J9YX57 407 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 CNNM2Q9H8M5 875 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 STAP2Q9UGK3 403 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 NSFL1CQ9UNZ2 370 aaKnown RBP18.76■□□□□ 0.59
CUX1-213ENST00000549414 EPB41L2O43491 1005 aaKnown RBP18.76■□□□□ 0.59
CUX1-213ENST00000549414 PRDM1O75626 825 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 ARHGAP29Q52LW3 1261 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 GAS2L3Q86XJ1 694 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 APPBP2Q92624 585 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 BAG3O95817 575 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 TNNT3P45378 269 aaPredicted RBP18.76■□□□□ 0.59
CUX1-213ENST00000549414 OSBPL3Q9H4L5 887 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 DBNLQ9UJU6 430 aaKnown RBP18.76■□□□□ 0.59
CUX1-213ENST00000549414 AXIN2Q9Y2T1 843 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 PTCH1Q13635 1447 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 TCIRG1Q13488 830 aa18.76■□□□□ 0.59
CUX1-213ENST00000549414 PUS3Q9BZE2 481 aaKnown RBP18.76■□□□□ 0.59
CUX1-213ENST00000549414 URI1O94763 535 aaPredicted RBP18.75■□□□□ 0.59
CUX1-213ENST00000549414 HSP90B2PQ58FF3 399 aa18.75■□□□□ 0.59
CUX1-213ENST00000549414 TEX35Q5T0J7 233 aa18.75■□□□□ 0.59
CUX1-213ENST00000549414 ASAP1Q9ULH1 1129 aa18.75■□□□□ 0.59
CUX1-213ENST00000549414 FAM98CQ17RN3 349 aaKnown RBP18.75■□□□□ 0.59
CUX1-213ENST00000549414 PNPLA6Q8IY17 1366 aa18.75■□□□□ 0.59
CUX1-213ENST00000549414 BMP2KQ9NSY1 1161 aaPredicted RBP18.75■□□□□ 0.59
CUX1-213ENST00000549414 ZNF76P36508 570 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 NOM1Q5C9Z4 860 aaKnown RBP18.74■□□□□ 0.59
CUX1-213ENST00000549414 PDCL2Q8N4E4 241 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 TPCN1Q9ULQ1 816 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 LDHCP07864 332 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 KIF5BP33176 963 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 NOLC1Q14978 699 aaKnown RBP eCLIP18.74■□□□□ 0.597e-6■■■□□ 16.5
CUX1-213ENST00000549414 LRRC7Q96NW7 1537 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 PDE8AO60658 829 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 KIF18AQ8NI77 898 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 GNPATO15228 680 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 MCM9Q9NXL9 1143 aa18.74■□□□□ 0.59
CUX1-213ENST00000549414 UBA7P41226 1012 aa18.73■□□□□ 0.59
CUX1-213ENST00000549414 PTGS1P23219 599 aa18.73■□□□□ 0.59
CUX1-213ENST00000549414 TPTE2Q6XPS3 522 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms