RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 CYP46A1Q9Y6A2 500 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 MED23Q9ULK4 1368 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 A0A0D9SFI3 127 aa16.09■□□□□ 0.17
PTCH1-215ENST00000547672 HMGB1P09429 215 aaKnown RBP16.09■□□□□ 0.17
PTCH1-215ENST00000547672 GYS1P13807 737 aa16.09■□□□□ 0.17
PTCH1-215ENST00000547672 MAP3K12Q12852 859 aa16.09■□□□□ 0.17
PTCH1-215ENST00000547672 ANKRD1Q15327 319 aa16.09■□□□□ 0.17
PTCH1-215ENST00000547672 RBM17Q96I25 401 aaKnown RBP16.09■□□□□ 0.17
PTCH1-215ENST00000547672 UBR3Q6ZT12 1888 aa16.08■□□□□ 0.17
PTCH1-215ENST00000547672 SERPINB2P05120 415 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 UBE3CQ15386 1083 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 CREB3L3Q68CJ9 461 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 VPS37DQ86XT2 251 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 SPATA5Q8NB90 893 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 HELBQ8NG08 1087 aaPredicted RBP16.08■□□□□ 0.16
PTCH1-215ENST00000547672 APPBP2Q92624 585 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 RPGRQ92834 1020 aaKnown RBP16.08■□□□□ 0.16
PTCH1-215ENST00000547672 CHMP4CQ96CF2 233 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 ZSCAN31Q96LW9 406 aaPredicted RBP16.08■□□□□ 0.16
PTCH1-215ENST00000547672 MINPP1Q9UNW1 487 aa16.08■□□□□ 0.16
PTCH1-215ENST00000547672 BBOX1O75936 387 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 ZAP70P43403 619 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 PTH1RQ03431 593 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 WASHC4Q2M389 1173 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 PRPF40BQ6NWY9 871 aaKnown RBP16.07■□□□□ 0.16
PTCH1-215ENST00000547672 PROM2Q8N271 834 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 EDC3Q96F86 508 aaKnown RBP16.07■□□□□ 0.16
PTCH1-215ENST00000547672 INTS4Q96HW7 963 aaKnown RBP16.07■□□□□ 0.16
PTCH1-215ENST00000547672 SLKQ9H2G2 1235 aaPredicted RBP16.07■□□□□ 0.16
PTCH1-215ENST00000547672 ANTXR1Q9H6X2 564 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 C4AP0C0L4 1744 aa16.07■□□□□ 0.16
PTCH1-215ENST00000547672 PDIA4P13667 645 aaKnown RBP16.06■□□□□ 0.16
PTCH1-215ENST00000547672 MCAMP43121 646 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 NUCB2P80303 420 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 GRAPQ13588 217 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 VPS53Q5VIR6 699 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 GRAPLQ8TC17 118 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-215ENST00000547672 AKT1S1Q96B36 256 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 ALDH8A1Q9H2A2 487 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-215ENST00000547672 ZSWIM6Q9HCJ5 1215 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 DENND2AQ9ULE3 1009 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 LEMD3Q9Y2U8 911 aa16.06■□□□□ 0.16
PTCH1-215ENST00000547672 ARAP2Q8WZ64 1704 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 SLC27A2O14975 620 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 PHKA1P46020 1223 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 SF3B2Q13435 895 aaKnown RBP16.05■□□□□ 0.16
PTCH1-215ENST00000547672 POTEAQ6S8J7 498 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 RUFY3Q7L099 469 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 IL25Q9H293 177 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 PALD1Q9ULE6 856 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 LIMCH1Q9UPQ0 1083 aa16.05■□□□□ 0.16
PTCH1-215ENST00000547672 PDS5AQ29RF7 1337 aaKnown RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 CASTP20810 708 aaKnown RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 PTMSP20962 102 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 SLC9C2Q5TAH2 1124 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 PRR5LQ6MZQ0 368 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 BLOC1S2Q6QNY1 142 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 SMIM5Q71RC9 77 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 JAKMIP1Q96N16 626 aaKnown RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 CRAMP1Q96RY5 1269 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 TMX4Q9H1E5 349 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 SH2B1Q9NRF2 756 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 PDRG1Q9NUG6 133 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 RGPD3A6NKT7 1758 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-215ENST00000547672 RGPD4Q7Z3J3 1758 aa16.04■□□□□ 0.16
PTCH1-215ENST00000547672 CYP2E1P05181 493 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-215ENST00000547672 GNAT2P19087 354 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 HOXA10P31260 410 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-215ENST00000547672 ADD2P35612 726 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 CRY2Q49AN0 593 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 AMIGO3Q86WK7 504 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 CELF1Q92879 486 aaKnown RBP16.03■□□□□ 0.16
PTCH1-215ENST00000547672 BRIP1Q9BX63 1249 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 PARP3Q9Y6F1 533 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 NDUFB9Q9Y6M9 179 aa16.03■□□□□ 0.16
PTCH1-215ENST00000547672 ZNF804BA4D1E1 1349 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 KLRG2A4D1S0 409 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 FRAT2O75474 233 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 IDH1O75874 414 aaKnown RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 PDE6BP35913 854 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 CUL4AQ13619 759 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 SCARF1Q14162 830 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 IMMTQ16891 758 aaKnown RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 C3orf67Q6ZVT6 689 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 ZNF589Q86UQ0 364 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 RASEFQ8IZ41 740 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 ZGPATQ8N5A5 531 aaKnown RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 SPRYD3Q8NCJ5 442 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 TMX3Q96JJ7 454 aa16.02■□□□□ 0.16
PTCH1-215ENST00000547672 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-215ENST00000547672 RPAP1Q9BWH6 1393 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 POLRMTO00411 1230 aaKnown RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 CD2BP2O95400 341 aaKnown RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 HSPD1P10809 573 aaKnown RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 HIBADHP31937 336 aaKnown RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 BCAMP50895 628 aa16.01■□□□□ 0.15
PTCH1-215ENST00000547672 SPTY2D1Q68D10 685 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-215ENST00000547672 FBXO33Q7Z6M2 555 aa16.01■□□□□ 0.15
PTCH1-215ENST00000547672 NEK1Q96PY6 1258 aa16.01■□□□□ 0.15
PTCH1-215ENST00000547672 STK32BQ9NY57 414 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms