RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FSIP1Q8NA03 581 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 PKNOX2Q96KN3 472 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 AIFM3Q96NN9 605 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 INCENPQ9NQS7 918 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 DDX19AQ9NUU7 478 aaKnown RBP17.67■□□□□ 0.42
USP28-214ENST00000545540 SPTLC3Q9NUV7 552 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 GOLGA6L6A8MZA4 724 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 ZSCAN25Q6NSZ9 544 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 ELP1O95163 1332 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 GOLGA6L19H0YKK7 550 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 PDIA3P30101 505 aaKnown RBP17.66■□□□□ 0.42
USP28-214ENST00000545540 C19orf44Q9H6X5 657 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 CWC25Q9NXE8 425 aaPredicted RBP17.66■□□□□ 0.42
USP28-214ENST00000545540 BECN2A8MW95 431 aa17.66■□□□□ 0.42
USP28-214ENST00000545540 ILDR1Q86SU0 546 aaPredicted RBP17.66■□□□□ 0.42
USP28-214ENST00000545540 ATP2B3Q16720 1220 aa17.65■□□□□ 0.42
USP28-214ENST00000545540 SNAP23O00161 211 aa17.65■□□□□ 0.42
USP28-214ENST00000545540 TSGA10IPQ3SY00 556 aa17.65■□□□□ 0.42
USP28-214ENST00000545540 SDF4Q9BRK5 362 aa17.65■□□□□ 0.42
USP28-214ENST00000545540 CLIC4Q9Y696 253 aa17.65■□□□□ 0.42
USP28-214ENST00000545540 NCAPD2Q15021 1401 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 LMO7Q8WWI1 1683 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 UBE2Q2LH0YL09 131 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 PFKFB2O60825 505 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 U2AF2P26368 475 aaKnown RBP eCLIP17.64■□□□□ 0.41
USP28-214ENST00000545540 TPD52L1Q16890 204 aaPredicted RBP17.64■□□□□ 0.41
USP28-214ENST00000545540 PUS7LQ9H0K6 701 aaKnown RBP17.64■□□□□ 0.41
USP28-214ENST00000545540 FDPSP14324 419 aaKnown RBP17.64■□□□□ 0.41
USP28-214ENST00000545540 ZAP70P43403 619 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 TAF7LQ5H9L4 462 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 AOPEPQ8N6M6 819 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 CFAP45Q9UL16 551 aa17.64■□□□□ 0.41
USP28-214ENST00000545540 N4BP2Q86UW6 1770 aaPredicted RBP17.64■□□□□ 0.41
USP28-214ENST00000545540 TNNT1P13805 278 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 CHAF1AQ13111 956 aaPredicted RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 SF3A1Q15459 793 aaKnown RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 MARCKSP29966 332 aaPredicted RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 CCDC73Q6ZRK6 1079 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 PRIMPOLQ96LW4 560 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 ZHX1Q9UKY1 873 aaPredicted RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 H7C1W4 665 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 EYA2O00167 538 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 KINO60870 393 aaKnown RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 APPP05067 770 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 SNW1Q13573 536 aaKnown RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 HSP90AA4PQ58FG1 418 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 HELBQ8NG08 1087 aaPredicted RBP17.63■□□□□ 0.41
USP28-214ENST00000545540 CEP126Q9P2H0 1117 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 CRYBG1Q9Y4K1 1723 aa17.63■□□□□ 0.41
USP28-214ENST00000545540 TTC39AQ5SRH9 613 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 ZMYM1Q5SVZ6 1142 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 PRDM11Q9NQV5 511 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 PCDHA7Q9UN72 937 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 C5P01031 1676 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 KLF18A0A0U1RQI7 1052 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 RNF113AO15541 343 aaKnown RBP17.62■□□□□ 0.41
USP28-214ENST00000545540 FGAP02671 866 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 NDUFA8P51970 172 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 HSPA2P54652 639 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 HMGN5P82970 282 aaKnown RBP17.62■□□□□ 0.41
USP28-214ENST00000545540 EXOSC10Q01780 885 aaKnown RBP17.62■□□□□ 0.41
USP28-214ENST00000545540 CCDC57Q2TAC2 916 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 PLA2G4DQ86XP0 818 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 SMARCC2Q8TAQ2 1214 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 XAGE2Q96GT9 111 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 MYL10Q9BUA6 226 aa17.62■□□□□ 0.41
USP28-214ENST00000545540 C1orf167Q5SNV9 1468 aa17.61■□□□□ 0.41
USP28-214ENST00000545540 IQCB1Q15051 598 aa17.61■□□□□ 0.41
USP28-214ENST00000545540 CCDC82Q8N4S0 544 aa17.61■□□□□ 0.41
USP28-214ENST00000545540 SENP2Q9HC62 589 aa17.61■□□□□ 0.41
USP28-214ENST00000545540 GOLGA8BA8MQT2 603 aa17.6■□□□□ 0.41
USP28-214ENST00000545540 FOXP2O15409 715 aa17.6■□□□□ 0.41
USP28-214ENST00000545540 ZSCAN16Q9H4T2 348 aaPredicted RBP17.6■□□□□ 0.41
USP28-214ENST00000545540 CHD2O14647 1828 aaKnown RBP17.6■□□□□ 0.41
USP28-214ENST00000545540 TDRD7Q8NHU6 1098 aaKnown RBP17.6■□□□□ 0.41
USP28-214ENST00000545540 PRC1O43663 620 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 IL15P40933 162 aaPredicted RBP17.59■□□□□ 0.41
USP28-214ENST00000545540 STK38Q15208 465 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 ZCRB1Q8TBF4 217 aaKnown RBP17.59■□□□□ 0.41
USP28-214ENST00000545540 PALLDQ8WX93 1383 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 DPCR1Q3MIW9 517 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 PDCL2Q8N4E4 241 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 PHKBQ93100 1093 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 ALDH8A1Q9H2A2 487 aaPredicted RBP17.59■□□□□ 0.41
USP28-214ENST00000545540 ORC3Q9UBD5 711 aaPredicted RBP17.59■□□□□ 0.41
USP28-214ENST00000545540 RCOR1Q9UKL0 485 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 KIF28PB7ZC32 967 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 CPLX1O14810 134 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 IDH1O75874 414 aaKnown RBP17.59■□□□□ 0.41
USP28-214ENST00000545540 ASAP1Q9ULH1 1129 aa17.59■□□□□ 0.41
USP28-214ENST00000545540 TMEM94Q12767 1356 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 SPECC1Q5M775 1068 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 C8orf76Q96K31 380 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 MAP7D2Q96T17 732 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 GOLGB1Q14789 3259 aaKnown RBP17.58■□□□□ 0.4
USP28-214ENST00000545540 CARMIL3Q8ND23 1372 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 JCADQ9P266 1359 aa17.58■□□□□ 0.4
USP28-214ENST00000545540 SKILP12757 684 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 RBM43Q6ZSC3 357 aaKnown RBP17.57■□□□□ 0.4
USP28-214ENST00000545540 DHX40Q8IX18 779 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms