RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 NUF2Q9BZD4 464 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 KRT86O43790 486 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 GSTO1P78417 241 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 ATP6V0A2Q9Y487 856 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 PTGS1P23219 599 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 CAPZA3Q96KX2 299 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 NKIRAS1Q9NYS0 192 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 RABGAP1Q9Y3P9 1069 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 SKILP12757 684 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 TAF12Q16514 161 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 CCDC25Q86WR0 208 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 MICU3Q86XE3 530 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 ZMYND15Q9H091 742 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 FAM114A2Q9NRY5 505 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 ERCC3P19447 782 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 IFT81Q8WYA0 676 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 GDPD2Q9HCC8 539 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 PSMA7O14818 248 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 RRS1Q15050 365 aaKnown RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 CLUL1Q15846 466 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 FAM76AQ8TAV0 307 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 TNNC1P63316 161 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 CEP128Q6ZU80 1094 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 RAB3IPQ96QF0 476 aaPredicted RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 RBM27Q9P2N5 1060 aaKnown RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 SEL1L2Q5TEA6 688 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 AFAP1L2Q8N4X5 818 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 NEK1Q96PY6 1258 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 HAUS7Q99871 368 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 MTUS1Q9ULD2 1270 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 PCK1P35558 622 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 CALCOCO2Q13137 446 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 MAP7Q14244 749 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 GKAP1Q5VSY0 366 aaPredicted RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 RSPH3Q86UC2 560 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 ZNF526Q8TF50 670 aaPredicted RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 UBLCP1Q8WVY7 318 aaPredicted RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 HMG20BQ9P0W2 317 aa11.75□□□□□ -0.53
PCDH9-204ENST00000544246 ZNF219Q9P2Y4 722 aaPredicted RBP11.75□□□□□ -0.53
PCDH9-204ENST00000544246 ZSCAN23Q3MJ62 389 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 LARP6Q9BRS8 491 aaKnown RBP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 TLDC2A0PJX2 215 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 ZNF853P0CG23 659 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 TSGA10Q9BZW7 698 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 A0A1B0GUA9 196 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 C6orf229H3BNL8 230 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 STMN1P16949 149 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 HSPA1LP34931 641 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 ASIC1P78348 528 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 ARID5AQ03989 594 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 RASA3Q14644 834 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 INF2Q27J81 1249 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 CRNKL1Q9BZJ0 848 aaKnown RBP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 ANO6Q4KMQ2 910 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 CCDC65Q8IXS2 484 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 NEK11Q8NG66 645 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 CACYBPQ9HB71 228 aaKnown RBP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 KIAA0556O60303 1618 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 UAP1Q16222 522 aaPredicted RBP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 GPR161Q8N6U8 529 aaKnown RBP11.74□□□□□ -0.53
PCDH9-204ENST00000544246 FAM212AQ96EL1 285 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 SLC12A5Q9H2X9 1139 aa11.74□□□□□ -0.53
PCDH9-204ENST00000544246 SYT1P21579 422 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 VAV2P52735 878 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 VCXQ9H320 206 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 MIS18AQ9NYP9 233 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 CUL4BQ13620 913 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 ALDH1L2Q3SY69 923 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 DNAJC21Q5F1R6 531 aaKnown RBP11.73□□□□□ -0.53
PCDH9-204ENST00000544246 KCNG4Q8TDN1 519 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 BICDL2A1A5D9 508 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 TSPY3P0CV98 308 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 TSPY8P0CW00 308 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 NOLC1Q14978 699 aaKnown RBP eCLIP11.73□□□□□ -0.53
PCDH9-204ENST00000544246 TCHPQ9BT92 498 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 KRT23Q9C075 422 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 AMOTL2Q9Y2J4 779 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 HMGB1P1B2RPK0 211 aaPredicted RBP11.73□□□□□ -0.53
PCDH9-204ENST00000544246 WTAPQ15007 396 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 SLC4A8Q2Y0W8 1093 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 RAB11FIP4Q86YS3 637 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 UGGT2Q9NYU1 1516 aa11.73□□□□□ -0.53
PCDH9-204ENST00000544246 PTCD1O75127 700 aaKnown RBP11.72□□□□□ -0.53
PCDH9-204ENST00000544246 TMCO4Q5TGY1 634 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 PPP1R21Q6ZMI0 780 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 CCDC42Q96M95 316 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 NCAPGQ9BPX3 1015 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 VIMP08670 466 aaKnown RBP11.72□□□□□ -0.53
PCDH9-204ENST00000544246 HEATR3Q7Z4Q2 680 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 KCNH5Q8NCM2 988 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 DDX27Q96GQ7 796 aaKnown RBP11.72□□□□□ -0.53
PCDH9-204ENST00000544246 USH1CQ9Y6N9 552 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 A0A1B0GUL7 405 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 E7EVH7 732 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 TRPC3Q13507 836 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 GIMAP6Q6P9H5 292 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 CDC5LQ99459 802 aaKnown RBP11.72□□□□□ -0.53
PCDH9-204ENST00000544246 FAM204AQ9H8W3 233 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 BUB1BO60566 1050 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms