RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 PLIN1O60240 522 aa15.49■□□□□ 0.07
VPS33A-207ENST00000542790 G3V3G9 751 aa15.48■□□□□ 0.07
VPS33A-207ENST00000542790 ZBTB7BO15156 539 aaPredicted RBP15.48■□□□□ 0.07
VPS33A-207ENST00000542790 KCNJ4P48050 445 aa15.48■□□□□ 0.07
VPS33A-207ENST00000542790 ZNF804BA4D1E1 1349 aa15.47■□□□□ 0.07
VPS33A-207ENST00000542790 ATMINO43313 823 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 DDNO94850 711 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 MTX1Q13505 466 aa15.47■□□□□ 0.07
VPS33A-207ENST00000542790 PDE3AQ14432 1141 aa15.47■□□□□ 0.07
VPS33A-207ENST00000542790 ASTLQ6HA08 431 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 GPC2Q8N158 579 aa15.47■□□□□ 0.07
VPS33A-207ENST00000542790 GPR101Q96P66 508 aaPredicted RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 PUS3Q9BZE2 481 aaKnown RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 CHMP4BQ9H444 224 aaKnown RBP15.47■□□□□ 0.07
VPS33A-207ENST00000542790 RIPOR2Q9Y4F9 1068 aa15.47■□□□□ 0.07
VPS33A-207ENST00000542790 MROH5Q6ZUA9 1318 aa15.46■□□□□ 0.07
VPS33A-207ENST00000542790 SRGAP3O43295 1099 aa15.46■□□□□ 0.07
VPS33A-207ENST00000542790 TAF5LO75529 589 aa15.46■□□□□ 0.07
VPS33A-207ENST00000542790 RFX5P48382 616 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-207ENST00000542790 MVPQ14764 893 aaKnown RBP15.46■□□□□ 0.07
VPS33A-207ENST00000542790 DOK7Q18PE1 504 aa15.46■□□□□ 0.07
VPS33A-207ENST00000542790 HELBQ8NG08 1087 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-207ENST00000542790 KLHDC4Q8TBB5 520 aa15.46■□□□□ 0.07
VPS33A-207ENST00000542790 BMP2KQ9NSY1 1161 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-207ENST00000542790 CACNA1SQ13698 1873 aa15.46■□□□□ 0.06
VPS33A-207ENST00000542790 LRRC37AA6NMS7 1700 aa15.46■□□□□ 0.06
VPS33A-207ENST00000542790 ZNF541Q9H0D2 1346 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 WTIPA6NIX2 430 aaPredicted RBP15.45■□□□□ 0.06
VPS33A-207ENST00000542790 EYA2O00167 538 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 VEGFAP15692 232 aaPredicted RBP15.45■□□□□ 0.06
VPS33A-207ENST00000542790 PTPN12Q05209 780 aaKnown RBP15.45■□□□□ 0.06
VPS33A-207ENST00000542790 CXCL9Q07325 125 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 TNIP1Q15025 636 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 DBNDD1Q9H9R9 158 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 RRAGCQ9HB90 399 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 NMRK2Q9NPI5 230 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 DDX19BQ9UMR2 479 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 MED23Q9ULK4 1368 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 DUOX1Q9NRD9 1551 aa15.45■□□□□ 0.06
VPS33A-207ENST00000542790 ECE2O60344 883 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 CHRM1P11229 460 aaPredicted RBP15.44■□□□□ 0.06
VPS33A-207ENST00000542790 LRRC24Q50LG9 513 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 METTL24Q5JXM2 366 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 CIAPIN1Q6FI81 312 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 PODNQ7Z5L7 613 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 L3MBTL3Q96JM7 780 aaPredicted RBP15.44■□□□□ 0.06
VPS33A-207ENST00000542790 COPRSQ9NQ92 184 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 PCDHB8Q9UN66 801 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 COG6Q9Y2V7 657 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 GJA3Q9Y6H8 435 aa15.44■□□□□ 0.06
VPS33A-207ENST00000542790 IQCA1LA6NCM1 817 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 YDJCA8MPS7 323 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 KIF3CO14782 793 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 CIAO1O76071 339 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 UBE4AQ14139 1066 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 C15orf52Q6ZUT6 534 aaKnown RBP15.43■□□□□ 0.06
VPS33A-207ENST00000542790 COA1Q9GZY4 146 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 COL4A5P29400 1685 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 TAF1P21675 1872 aa15.43■□□□□ 0.06
VPS33A-207ENST00000542790 SBF1O95248 1867 aa15.42■□□□□ 0.06
VPS33A-207ENST00000542790 RAD17O75943 681 aa15.42■□□□□ 0.06
VPS33A-207ENST00000542790 PDE8BO95263 885 aa15.42■□□□□ 0.06
VPS33A-207ENST00000542790 IL15P40933 162 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-207ENST00000542790 ATN1P54259 1190 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-207ENST00000542790 ATP8B2P98198 1209 aa15.42■□□□□ 0.06
VPS33A-207ENST00000542790 C20orf194Q5TEA3 1177 aa15.42■□□□□ 0.06
VPS33A-207ENST00000542790 C16orf71Q8IYS4 520 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-207ENST00000542790 MYH3P11055 1940 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 POTECB2RU33 542 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 SNAP23O00161 211 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 RRP1P56182 461 aaKnown RBP15.41■□□□□ 0.06
VPS33A-207ENST00000542790 ATG9AQ7Z3C6 839 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 TXNRD3Q86VQ6 643 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 SIL1Q9H173 461 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 C1orf115Q9H7X2 142 aa15.41■□□□□ 0.06
VPS33A-207ENST00000542790 PNMA6EA0A0J9YXQ4 647 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 KLRK1P26718 216 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 LMOD1P29536 600 aaPredicted RBP15.4■□□□□ 0.06
VPS33A-207ENST00000542790 TIE1P35590 1138 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 ZNF804AQ7Z570 1209 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 VGLL2Q8N8G2 317 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 SSH3Q8TE77 659 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 ZBTB40Q9NUA8 1239 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 CEP126Q9P2H0 1117 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 HACL1Q9UJ83 578 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 PA2G4Q9UQ80 394 aaKnown RBP15.4■□□□□ 0.06
VPS33A-207ENST00000542790 LTBP1Q14766 1721 aa15.4■□□□□ 0.06
VPS33A-207ENST00000542790 PSMD14O00487 310 aa15.39■□□□□ 0.05
VPS33A-207ENST00000542790 TOMM70O94826 608 aa15.39■□□□□ 0.05
VPS33A-207ENST00000542790 PUM3Q15397 648 aaKnown RBP15.39■□□□□ 0.05
VPS33A-207ENST00000542790 KCNQ5Q9NR82 932 aa15.39■□□□□ 0.05
VPS33A-207ENST00000542790 IRS2Q9Y4H2 1338 aa15.39■□□□□ 0.05
VPS33A-207ENST00000542790 TIAM2Q8IVF5 1701 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 USP17L3A6NCW0 530 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 USP17L4A6NCW7 530 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 TTLL13PA6NNM8 815 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 VIL1P09327 827 aaKnown RBP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 IFIT1P09914 478 aaKnown RBP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 RPS12P25398 132 aaKnown RBP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 GMPSP49915 693 aaPredicted RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms