RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CBX1P83916 185 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 CCDC158Q5M9N0 1113 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 CCDC73Q6ZRK6 1079 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 SMIM5Q71RC9 77 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 EYA2O00167 538 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 HLFQ16534 295 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 HS1BP3Q53T59 392 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 SPECC1Q5M775 1068 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 MICU3Q86XE3 530 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 RALYLQ86SE5 291 aaKnown RBP15.91■□□□□ 0.14
PTPN1-202ENST00000541713 PHKBQ93100 1093 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 GOLPH3LQ9H4A5 285 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 CLIP2Q9UDT6 1046 aa15.91■□□□□ 0.14
PTPN1-202ENST00000541713 KINO60870 393 aaKnown RBP15.9■□□□□ 0.14
PTPN1-202ENST00000541713 CTDNEP1O95476 244 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 KCNQ4P56696 695 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 KRT32Q14532 448 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 TMEM87AQ8NBN3 555 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 TMOD3Q9NYL9 352 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 PXDNLA1KZ92 1463 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 STK38Q15208 465 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 NSUN7Q8NE18 718 aaKnown RBP15.9■□□□□ 0.14
PTPN1-202ENST00000541713 PIBF1Q8WXW3 757 aa15.9■□□□□ 0.14
PTPN1-202ENST00000541713 NFXL1Q6ZNB6 911 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 NKX2-3Q8TAU0 364 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 HMG20BQ9P0W2 317 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 FGAP02671 866 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 ADD1P35611 737 aaKnown RBP15.89■□□□□ 0.13
PTPN1-202ENST00000541713 IFIT5Q13325 482 aaKnown RBP15.89■□□□□ 0.13
PTPN1-202ENST00000541713 ACSBG1Q96GR2 724 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 MED23Q9ULK4 1368 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 RNF113AO15541 343 aaKnown RBP15.89■□□□□ 0.13
PTPN1-202ENST00000541713 SLC9C2Q5TAH2 1124 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 FUCA2Q9BTY2 467 aa15.89■□□□□ 0.13
PTPN1-202ENST00000541713 PRC1O43663 620 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 RESTQ13127 1097 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 TPD52L1Q16890 204 aaPredicted RBP15.88■□□□□ 0.13
PTPN1-202ENST00000541713 LRP10Q7Z4F1 713 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 SENP2Q9HC62 589 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 ORC3Q9UBD5 711 aaPredicted RBP15.88■□□□□ 0.13
PTPN1-202ENST00000541713 TRMT112Q9UI30 125 aaKnown RBP15.88■□□□□ 0.13
PTPN1-202ENST00000541713 NFAT5O94916 1531 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 AOPEPQ8N6M6 819 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 CLIC4Q9Y696 253 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 PDIA3P30101 505 aaKnown RBP15.88■□□□□ 0.13
PTPN1-202ENST00000541713 IL15P40933 162 aaPredicted RBP15.88■□□□□ 0.13
PTPN1-202ENST00000541713 CCDC144BQ3MJ40 725 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 TMX1Q9H3N1 280 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 GREM2Q9H772 168 aa15.88■□□□□ 0.13
PTPN1-202ENST00000541713 SRCAPQ6ZRS2 3230 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 RIOK3O14730 519 aaKnown RBP15.87■□□□□ 0.13
PTPN1-202ENST00000541713 CHAF1AQ13111 956 aaPredicted RBP15.87■□□□□ 0.13
PTPN1-202ENST00000541713 UVSSAQ2YD98 709 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 CCDC24Q8N4L8 307 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 C1orf167Q5SNV9 1468 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 hCG_1642624A0A1W2PR95 340 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 GOLGA6L6A8MZA4 724 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 SMC2O95347 1197 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 C8orf76Q96K31 380 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 FER1L4A9Z1Z3 1794 aa15.87■□□□□ 0.13
PTPN1-202ENST00000541713 UTYO14607 1347 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 H7C1W4 665 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 CLSTN2Q9H4D0 955 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 CFAP45Q9UL16 551 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 MTMR7Q9Y216 660 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 B4E1Z4 1266 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 KIF6Q6ZMV9 814 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 PDCL3Q9H2J4 239 aa15.86■□□□□ 0.13
PTPN1-202ENST00000541713 ZNF213O14771 459 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 IMMTQ16891 758 aaKnown RBP15.85■□□□□ 0.13
PTPN1-202ENST00000541713 MIGA1Q8NAN2 632 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 JAG2Q9Y219 1238 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 HEG1Q9ULI3 1381 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 GPAA1O43292 621 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 ITGA6P23229 1130 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 ATP2B3Q16720 1220 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 BICDL1Q6ZP65 573 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 FAM177A1Q8N128 213 aaPredicted RBP15.85■□□□□ 0.13
PTPN1-202ENST00000541713 CACTINQ8WUQ7 758 aaKnown RBP15.85■□□□□ 0.13
PTPN1-202ENST00000541713 IL2RBP14784 551 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 CASP7P55210 303 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 GOLGA8FQ08AF8 430 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 GOLGA8DPQ0D2H9 430 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 SYNE3Q6ZMZ3 975 aa15.85■□□□□ 0.13
PTPN1-202ENST00000541713 CTDSPL2Q05D32 466 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 CREBRFQ8IUR6 639 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 DDX19AQ9NUU7 478 aaKnown RBP15.84■□□□□ 0.13
PTPN1-202ENST00000541713 ADAMTS2O95450 1211 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 RABL6Q3YEC7 729 aaPredicted RBP15.84■□□□□ 0.13
PTPN1-202ENST00000541713 ZMYM1Q5SVZ6 1142 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 CADPS2Q86UW7 1296 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 BTG4Q9NY30 223 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 NDUFA8P51970 172 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 KCNB2Q92953 911 aa15.84■□□□□ 0.13
PTPN1-202ENST00000541713 WTIPA6NIX2 430 aaPredicted RBP15.83■□□□□ 0.12
PTPN1-202ENST00000541713 USP27XA6NNY8 438 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 EPB41L2O43491 1005 aaKnown RBP15.83■□□□□ 0.12
PTPN1-202ENST00000541713 MCM5P33992 734 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 ZNF75DP51815 510 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 TRDNQ13061 729 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms