RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 DISP2A7MBM2 1401 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 CCDC196A0A1B0GTZ2 297 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 ANO6Q4KMQ2 910 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 LRCH2Q5VUJ6 765 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 KDM6AO15550 1401 aaPredicted RBP11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 BTBD11A6QL63 1104 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 KCNQ3O43525 872 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 VAMP4O75379 141 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 MAP3K11Q16584 847 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 BARGINQ6ZT62 677 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 TDRD7Q8NHU6 1098 aaKnown RBP11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 OTUD7AQ8TE49 926 aaPredicted RBP11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 UBXN4Q92575 508 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 PDRG1Q9NUG6 133 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 CDC25BP30305 580 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 CCZ1BP86790 482 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 CCZ1P86791 482 aaPredicted RBP11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 DDB1Q16531 1140 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 NRAPQ86VF7 1730 aa11.05□□□□□ -0.64
CTNNA1-243ENST00000540387 ANKRD65E5RJM6 399 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 PPP1R12AO14974 1030 aaPredicted RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 SNW1Q13573 536 aaKnown RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 PPP2R5AQ15172 486 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 TWISTNBQ3B726 338 aaPredicted RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 RPAINQ86UA6 219 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 CDCA7Q9BWT1 371 aaPredicted RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 SLC52A2Q9HAB3 445 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 KCND1Q9NSA2 647 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 CAMK4Q16566 473 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 GJD4Q96KN9 370 aaPredicted RBP11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 PALD1Q9ULE6 856 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 RGS12O14924 1447 aa11.04□□□□□ -0.64
CTNNA1-243ENST00000540387 CCDC69A6NI79 296 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 RPS6KA5O75582 802 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 SLC39A6Q13433 755 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 CC2D1AQ6P1N0 951 aaPredicted RBP11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 QTRT2Q9H974 415 aaKnown RBP11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 NWD2Q9ULI1 1742 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 A0A0G2JS52 829 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 F13A1P00488 732 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 CABP4P57796 275 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 SEMA3FQ13275 785 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 GORABQ5T7V8 394 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 SYTL4Q96C24 671 aaPredicted RBP11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 NUP62CLQ9H1M0 184 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 BABAM1Q9NWV8 329 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 SH3BP1Q9Y3L3 701 aa11.03□□□□□ -0.64
CTNNA1-243ENST00000540387 H3BQF6 201 aa11.02□□□□□ -0.64
CTNNA1-243ENST00000540387 TRDNQ13061 729 aa11.02□□□□□ -0.64
CTNNA1-243ENST00000540387 CKAP2LQ8IYA6 745 aa11.02□□□□□ -0.64
CTNNA1-243ENST00000540387 DNAAF4Q8WXU2 420 aa11.02□□□□□ -0.64
CTNNA1-243ENST00000540387 TRPC5Q9UL62 973 aaPredicted RBP11.02□□□□□ -0.64
CTNNA1-243ENST00000540387 STX6O43752 255 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 DNM1Q05193 864 aaKnown RBP11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 ALDH1L2Q3SY69 923 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 EFCAB13Q8IY85 973 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 ATP6V1DQ9Y5K8 247 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 PKD1L3Q7Z443 1732 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 EIF4A1P60842 406 aaKnown RBP11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 MAP9Q49MG5 647 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 CCDC158Q5M9N0 1113 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 TADA2BQ86TJ2 420 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 MARCH10Q8NA82 808 aaPredicted RBP11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 UPF3BQ9BZI7 483 aaKnown RBP11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 DCTPP1Q9H773 170 aa11.02□□□□□ -0.65
CTNNA1-243ENST00000540387 PARP4Q9UKK3 1724 aaKnown RBP11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 ERVV-2B6SEH9 535 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 TADA3O75528 432 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 SYT1P21579 422 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 ZRSR1Q15695 479 aaKnown RBP11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 TTLL5Q6EMB2 1281 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 CWC27Q6UX04 472 aaKnown RBP11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 CHMP3Q9Y3E7 222 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 ZNF165P49910 485 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 BIRC2Q13490 618 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 ZNF790Q6PG37 636 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 FUT8Q9BYC5 575 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 EPC1Q9H2F5 836 aa11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 RBM28Q9NW13 759 aaKnown RBP11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 MKRN1Q9UHC7 482 aaKnown RBP11.01□□□□□ -0.65
CTNNA1-243ENST00000540387 TPM1P09493 284 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 LIG1P18858 919 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 SCP2P22307 547 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 MNAT1P51948 309 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 MRFAP1L1Q96HT8 127 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 PPP1R13BQ96KQ4 1090 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 TNMDQ9H2S6 317 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 USP16Q9Y5T5 823 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 LRRC37A3O60309 1634 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 E4F1Q66K89 784 aaPredicted RBP11□□□□□ -0.65
CTNNA1-243ENST00000540387 MICALL1Q8N3F8 863 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 NECTIN2Q92692 538 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 ZNF428Q96B54 188 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 DNAJC25Q9H1X3 360 aa11□□□□□ -0.65
CTNNA1-243ENST00000540387 GTF3C5Q9Y5Q8 519 aaPredicted RBP11□□□□□ -0.65
CTNNA1-243ENST00000540387 TNS2Q63HR2 1409 aa10.99□□□□□ -0.65
CTNNA1-243ENST00000540387 A0A087WUV0 522 aaPredicted RBP10.99□□□□□ -0.65
CTNNA1-243ENST00000540387 ANAPC15P60006 121 aa10.99□□□□□ -0.65
CTNNA1-243ENST00000540387 TICAM2Q86XR7 235 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms