RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FIGNL2A6NMB9 653 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 ERC2O15083 957 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 TMPOP42166 694 aaKnown RBP7.99□□□□□ -1.13
USP28-207ENST00000538475 UBE2HP62256 183 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 PLEKHM2Q8IWE5 1019 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 RPAP2Q8IXW5 612 aaPredicted RBP7.99□□□□□ -1.13
USP28-207ENST00000538475 ZNF397Q8NF99 534 aaPredicted RBP7.99□□□□□ -1.13
USP28-207ENST00000538475 OSBPL3Q9H4L5 887 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 CEP126Q9P2H0 1117 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 ABCC4O15439 1325 aa7.99□□□□□ -1.13
USP28-207ENST00000538475 CLTCQ00610 1675 aaKnown RBP7.98□□□□□ -1.13
USP28-207ENST00000538475 ITSN1Q15811 1721 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 ARHGEF28Q8N1W1 1705 aaKnown RBP7.98□□□□□ -1.13
USP28-207ENST00000538475 ZFYVE9O95405 1425 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 VEGFBP49765 207 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 NFX1Q12986 1120 aaKnown RBP7.98□□□□□ -1.13
USP28-207ENST00000538475 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.98□□□□□ -1.13
USP28-207ENST00000538475 CC2D2BQ6DHV5 1058 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 PLEKHF1Q96S99 279 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 INSM2Q96T92 566 aaPredicted RBP7.98□□□□□ -1.13
USP28-207ENST00000538475 KCND1Q9NSA2 647 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 DNMT3LQ9UJW3 386 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.98□□□□□ -1.13
USP28-207ENST00000538475 CCDC171Q6TFL3 1326 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 RAD50Q92878 1312 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 ABCC1P33527 1531 aa7.98□□□□□ -1.13
USP28-207ENST00000538475 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP28-207ENST00000538475 CD109Q6YHK3 1445 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 ATP5J2-PTCD1G3V325 749 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 ATP8B1O43520 1251 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 HTATSF1O43719 755 aaKnown RBP7.97□□□□□ -1.13
USP28-207ENST00000538475 PTGIRP43119 386 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 MTHFSP49914 203 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 NCBP1Q09161 790 aaKnown RBP7.97□□□□□ -1.13
USP28-207ENST00000538475 SEMA3FQ13275 785 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 KIF18AQ8NI77 898 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 BCL2L13Q9BXK5 485 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 KNDC1Q76NI1 1749 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 GLI2P10070 1586 aa7.97□□□□□ -1.13
USP28-207ENST00000538475 RGS12O14924 1447 aa7.96□□□□□ -1.13
USP28-207ENST00000538475 ARID3CA6NKF2 412 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 U2AF1L5P0DN76 240 aaPredicted RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 U2AF2P26368 475 aaKnown RBP eCLIP7.96□□□□□ -1.14
USP28-207ENST00000538475 CDC25BP30305 580 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 CTSOP43234 321 aaPredicted RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 ERVK-9P63128 1117 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 U2AF1Q01081 240 aaKnown RBP eCLIP7.96□□□□□ -1.14
USP28-207ENST00000538475 BMS1Q14692 1282 aaKnown RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 MUM1L1Q5H9M0 696 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 NPAS3Q8IXF0 933 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 CCDC112Q8NEF3 446 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 TMX3Q96JJ7 454 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 FUCA2Q9BTY2 467 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 V9GYY5 206 aaPredicted RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 LMTK2Q8IWU2 1503 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 ADGRB1O14514 1584 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 MAP2P11137 1827 aaKnown RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 PNPLA6Q8IY17 1366 aa7.96□□□□□ -1.14
USP28-207ENST00000538475 RPAP1Q9BWH6 1393 aaPredicted RBP7.96□□□□□ -1.14
USP28-207ENST00000538475 CPSF1Q10570 1443 aaKnown RBP7.95□□□□□ -1.14
USP28-207ENST00000538475 ADGRB3O60242 1522 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 MYCP01106 439 aaPredicted RBP7.95□□□□□ -1.14
USP28-207ENST00000538475 CCDC192P0DO97 292 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 KCNJ4P48050 445 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 GNAI1P63096 354 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 TEX35Q5T0J7 233 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 RNF135Q8IUD6 432 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 RNF214Q8ND24 703 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 ERO1AQ96HE7 468 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 RRP7AQ9Y3A4 280 aaKnown RBP7.95□□□□□ -1.14
USP28-207ENST00000538475 ELP1O95163 1332 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 RPGRIP1LQ68CZ1 1315 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 MYH15Q9Y2K3 1946 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 MROH2AA6NES4 1674 aa7.95□□□□□ -1.14
USP28-207ENST00000538475 MEN1O00255 615 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 GSPT1P15170 499 aaKnown RBP7.94□□□□□ -1.14
USP28-207ENST00000538475 IRX3P78415 501 aaPredicted RBP7.94□□□□□ -1.14
USP28-207ENST00000538475 CYP2U1Q7Z449 544 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 TEX2Q8IWB9 1127 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 TXLNBQ8N3L3 684 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 ANKRD44Q8N8A2 993 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 IRF7Q92985 503 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 KIF1BPQ96EK5 621 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 TTC12Q9H892 705 aaPredicted RBP7.94□□□□□ -1.14
USP28-207ENST00000538475 AOX1Q06278 1338 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 PLCH2O75038 1416 aa7.94□□□□□ -1.14
USP28-207ENST00000538475 CDK12Q9NYV4 1490 aaPredicted RBP7.94□□□□□ -1.14
USP28-207ENST00000538475 EFCAB6Q5THR3 1501 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 H3BM21 787 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 HMMRO75330 724 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 TPM1P09493 284 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 CYP2C19P33261 490 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 SOX11P35716 441 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 SCTRP47872 440 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 TPM4P67936 248 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 LMOD3Q0VAK6 560 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 PKP1Q13835 747 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 USP48Q86UV5 1035 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 AEBP1Q8IUX7 1158 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 ZGPATQ8N5A5 531 aaKnown RBP7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms