RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-209	ENST00000538439	HLF	Q16534	295 aa		12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	CLEC4G	Q6UXB4	293 aa		12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	RPAP2	Q8IXW5	612 aa	Predicted RBP	12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ISCA1	Q9BUE6	129 aa		12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	NARF	Q9UHQ1	456 aa		12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	MYH14	Q7Z406	1995 aa	Known RBP	12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	TAF1L	Q8IZX4	1826 aa		12.58	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ARFGEF2	Q9Y6D5	1785 aa		12.57	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SSFA2	P28290	1259 aa		12.57	□□□□□ -0.4
NPIPB3-209	ENST00000538439	POM121	Q96HA1	1249 aa		12.57	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ZBED2	Q9BTP6	218 aa		12.57	□□□□□ -0.4
NPIPB3-209	ENST00000538439	UTY	O14607	1347 aa		12.57	□□□□□ -0.4
NPIPB3-209	ENST00000538439	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	KDM4A	O75164	1064 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	HMMR	O75330	724 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	NBPF7	P0C2Y1	421 aa	Predicted RBP	12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	USP46	P62068	366 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	PARP10	Q53GL7	1025 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	FLAD1	Q8NFF5	587 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SNRK	Q9NRH2	765 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	TFCP2L1	Q9NZI6	479 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	KIAA1468	Q9P260	1216 aa		12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439	LRRFIP2	Q9Y608	721 aa	Known RBP	12.56	□□□□□ -0.4
NPIPB3-209	ENST00000538439		H7C1W4	665 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	GPT	P24298	496 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	HDAC1	Q13547	482 aa	Predicted RBP	12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	CSPP1	Q1MSJ5	1256 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	USPL1	Q5W0Q7	1092 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ZNF34	Q8IZ26	560 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ANKRD44	Q8N8A2	993 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SYT17	Q9BSW7	474 aa		12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.55	□□□□□ -0.4
NPIPB3-209	ENST00000538439	PCCA	P05165	728 aa	Predicted RBP	12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ATP8B2	P98198	1209 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	CEP85	Q6P2H3	762 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SMIM5	Q71RC9	77 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	UBE3B	Q7Z3V4	1068 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	PPP1R42	Q7Z4L9	355 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	NLRP10	Q86W26	655 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	CCDC82	Q8N4S0	544 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	STK32B	Q9NY57	414 aa		12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.54	□□□□□ -0.4
NPIPB3-209	ENST00000538439	LILRB3	O75022	631 aa		12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	IGHD	P01880	384 aa		12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	NDUFV2	P19404	249 aa		12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SUCLG2	Q96I99	432 aa		12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	SRP68	Q9UHB9	627 aa	Known RBP	12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	TRMT112	Q9UI30	125 aa	Known RBP	12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	RABGEF1	Q9UJ41	708 aa		12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	USP42	Q9H9J4	1324 aa	Known RBP	12.53	□□□□□ -0.4
NPIPB3-209	ENST00000538439	ZBTB7A	O95365	584 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	HSP90B1	P14625	803 aa	Known RBP	12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SLC4A3	P48751	1232 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	ZNF827	Q17R98	1081 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	PRPF38B	Q5VTL8	546 aa	Known RBP	12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	AMIGO3	Q86WK7	504 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SETDB2	Q96T68	719 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	UTP14A	Q9BVJ6	771 aa	Known RBP	12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SLC4A5	Q9BY07	1137 aa		12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.52	□□□□□ -0.41
NPIPB3-209	ENST00000538439	NUP98	P52948	1817 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	AFDN	P55196	1824 aa	Known RBP	12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	CHD4	Q14839	1912 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	ARHGAP33	O14559	1287 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	GCGR	P47871	477 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	CASP7	P55210	303 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SLC15A2	Q16348	729 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	QPCT	Q16769	361 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	RTL5	Q5HYW3	569 aa	Predicted RBP	12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SUSD4	Q5VX71	490 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	TBC1D9B	Q66K14	1250 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	BICDL1	Q6ZP65	573 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	JARID2	Q92833	1246 aa	Predicted RBP	12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	GCC1	Q96CN9	775 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	PRM3	Q9NNZ6	103 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	KDM2B	Q8NHM5	1336 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SH3TC1	Q8TE82	1336 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	CDHR2	Q9BYE9	1310 aa		12.51	□□□□□ -0.41
NPIPB3-209	ENST00000538439	FAM177B	A6PVY3	158 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	GTF2E1	P29083	439 aa	Predicted RBP	12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	MTX1	Q13505	466 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SWT1	Q5T5J6	900 aa	Known RBP	12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SIRT2	Q8IXJ6	389 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	MTMR14	Q8NCE2	650 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	FAM89A	Q96GI7	184 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	NYX	Q9GZU5	481 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	BICC1	Q9H694	974 aa	Known RBP	12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	UBN2	Q6ZU65	1347 aa		12.5	□□□□□ -0.41
NPIPB3-209	ENST00000538439	UBR3	Q6ZT12	1888 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	ANKRD36C	Q5JPF3	1778 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	BCOR	Q6W2J9	1755 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	PNMA6E	A0A0J9YXQ4	647 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	IRS4	O14654	1257 aa	Predicted RBP	12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	SRGAP3	O43295	1099 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	HOXA2	O43364	376 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	GYS1	P13807	737 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	PSEN2	P49810	448 aa		12.49	□□□□□ -0.41
NPIPB3-209	ENST00000538439	COL23A1	Q86Y22	540 aa	Predicted RBP	12.49	□□□□□ -0.41

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