RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 WNT10BO00744 389 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 EIF2S2P20042 333 aaKnown RBP10.97□□□□□ -0.65
CLIP1-206ENST00000535290 RPS8P62241 208 aaKnown RBP10.97□□□□□ -0.65
CLIP1-206ENST00000535290 SP3Q02447 781 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 AIMP1Q12904 312 aaKnown RBP10.97□□□□□ -0.65
CLIP1-206ENST00000535290 SLC9C1Q4G0N8 1177 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 HSP90AB3PQ58FF7 597 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 COPS6Q7L5N1 327 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 SLC10A4Q96EP9 437 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 CLMNQ96JQ2 1002 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 MXD3Q9BW11 206 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 PODXL2Q9NZ53 605 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 PTCH2Q9Y6C5 1203 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 LAMB2P55268 1798 aa10.97□□□□□ -0.65
CLIP1-206ENST00000535290 ANKRD36CQ5JPF3 1778 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 SOX1O00570 391 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-206ENST00000535290 XAGE3Q8WTP9 111 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 DPF3Q92784 378 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 FAM89AQ96GI7 184 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 WNK4Q96J92 1243 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 ANKIB1Q9P2G1 1089 aa10.96□□□□□ -0.65
CLIP1-206ENST00000535290 COL6A3P12111 3177 aa10.96□□□□□ -0.66
CLIP1-206ENST00000535290 USP17L3A6NCW0 530 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 USP17L4A6NCW7 530 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 SASH1O94885 1247 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 ZBTB48P10074 688 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-206ENST00000535290 USP17L1Q7RTZ2 530 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 NBPF11Q86T75 865 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 LRCH3Q96II8 777 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 PTPN18Q99952 460 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 GGA1Q9UJY5 639 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 NUDCQ9Y266 331 aa10.95□□□□□ -0.66
CLIP1-206ENST00000535290 GJA5P36382 358 aa10.94□□□□□ -0.66
CLIP1-206ENST00000535290 RTL5Q5HYW3 569 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-206ENST00000535290 SH3TC2Q8TF17 1288 aa10.94□□□□□ -0.66
CLIP1-206ENST00000535290 CFAP53Q96M91 514 aa10.94□□□□□ -0.66
CLIP1-206ENST00000535290 SEC31BQ9NQW1 1179 aa10.94□□□□□ -0.66
CLIP1-206ENST00000535290 DACT2Q5SW24 774 aa10.93□□□□□ -0.66
CLIP1-206ENST00000535290 PODNQ7Z5L7 613 aa10.93□□□□□ -0.66
CLIP1-206ENST00000535290 OGFOD1Q8N543 542 aa10.93□□□□□ -0.66
CLIP1-206ENST00000535290 SHISA4Q96DD7 197 aa10.93□□□□□ -0.66
CLIP1-206ENST00000535290 LAMA3Q16787 3333 aa10.92□□□□□ -0.66
CLIP1-206ENST00000535290 ATP5J2-PTCD1G3V325 749 aa10.92□□□□□ -0.66
CLIP1-206ENST00000535290 MAP3K11Q16584 847 aa10.92□□□□□ -0.66
CLIP1-206ENST00000535290 OTUD7BQ6GQQ9 843 aa10.92□□□□□ -0.66
CLIP1-206ENST00000535290 COL25A1Q9BXS0 654 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-206ENST00000535290 KDM3BQ7LBC6 1761 aa10.91□□□□□ -0.66
CLIP1-206ENST00000535290 TESPA1A2RU30 521 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-206ENST00000535290 IRS4O14654 1257 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-206ENST00000535290 APOBEC3FQ8IUX4 373 aaKnown RBP10.91□□□□□ -0.66
CLIP1-206ENST00000535290 ZBED3Q96IU2 234 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-206ENST00000535290 ISCA1Q9BUE6 129 aa10.91□□□□□ -0.66
CLIP1-206ENST00000535290 DEFB129Q9H1M3 183 aa10.91□□□□□ -0.66
CLIP1-206ENST00000535290 DDX60Q8IY21 1712 aaKnown RBP10.91□□□□□ -0.66
CLIP1-206ENST00000535290 ZBTB7BO15156 539 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-206ENST00000535290 MTFR1Q15390 333 aa10.9□□□□□ -0.66
CLIP1-206ENST00000535290 UBE2Q1Q7Z7E8 422 aa10.9□□□□□ -0.66
CLIP1-206ENST00000535290 ARHGAP39Q9C0H5 1083 aa10.9□□□□□ -0.66
CLIP1-206ENST00000535290 TSPYL4Q9UJ04 414 aa10.9□□□□□ -0.66
CLIP1-206ENST00000535290 SSC5DA1L4H1 1573 aa10.9□□□□□ -0.67
CLIP1-206ENST00000535290 XDHP47989 1333 aa10.89□□□□□ -0.67
CLIP1-206ENST00000535290 PPP1R12BO60237 982 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-206ENST00000535290 POLA2Q14181 598 aa10.89□□□□□ -0.67
CLIP1-206ENST00000535290 ARHGEF6Q15052 776 aa10.89□□□□□ -0.67
CLIP1-206ENST00000535290 FBXW7Q969H0 707 aa10.89□□□□□ -0.67
CLIP1-206ENST00000535290 MS4A4AQ96JQ5 239 aa10.89□□□□□ -0.67
CLIP1-206ENST00000535290 A0A1W2PPC1 479 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 USP2O75604 605 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-206ENST00000535290 ATP2B4P23634 1241 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 STRIP1Q5VSL9 837 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 KIAA0825Q8IV33 1275 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 PLBD2Q8NHP8 589 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 BRI3BPQ8WY22 251 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 CCDC85AQ96PX6 553 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-206ENST00000535290 STAP2Q9UGK3 403 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 NR2E3Q9Y5X4 410 aa10.88□□□□□ -0.67
CLIP1-206ENST00000535290 MYO3BQ8WXR4 1341 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 UNCXA6NJT0 531 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 TAF1CQ15572 869 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-206ENST00000535290 NFE2L2Q16236 605 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 NBPF12Q5TAG4 269 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-206ENST00000535290 ANKRD13DQ6ZTN6 518 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 Q7L0L9 218 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 DEFB123Q8N688 67 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 PLEKHF1Q96S99 279 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 HTATIP2Q9BUP3 242 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 ZFYVE28Q9HCC9 887 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 PCDHAC2Q9Y5I4 1007 aa10.87□□□□□ -0.67
CLIP1-206ENST00000535290 PPP2R1AP30153 589 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 IREB2P48200 963 aaKnown RBP10.86□□□□□ -0.67
CLIP1-206ENST00000535290 TRIM28Q13263 835 aaKnown RBP10.86□□□□□ -0.67
CLIP1-206ENST00000535290 KRT24Q2M2I5 525 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 TXNRD3Q86VQ6 643 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 FAM43AQ8N2R8 423 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 OPTNQ96CV9 577 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 ELP3Q9H9T3 547 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 CHPF2Q9P2E5 772 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 STXBP5LQ9Y2K9 1186 aa10.86□□□□□ -0.67
CLIP1-206ENST00000535290 ECM2O94769 699 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-206ENST00000535290 GJA8P48165 433 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms