RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DBNDD1Q9H9R9 158 aa8.69□□□□□ -1.02
CD44-237ENST00000534082 PTPN22Q9Y2R2 807 aa8.69□□□□□ -1.02
CD44-237ENST00000534082 MAP3K15Q6ZN16 1313 aa8.69□□□□□ -1.02
CD44-237ENST00000534082 RTL9Q8NET4 1388 aa8.69□□□□□ -1.02
CD44-237ENST00000534082 LRRC37AA6NMS7 1700 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 DDX60Q8IY21 1712 aaKnown RBP8.68□□□□□ -1.02
CD44-237ENST00000534082 NUP98P52948 1817 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 BBOX1O75936 387 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 ARSIQ5FYB1 569 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 KIF6Q6ZMV9 814 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 NGEFQ8N5V2 710 aa8.68□□□□□ -1.02
CD44-237ENST00000534082 ECE2O60344 883 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 DIAPH1O60610 1272 aaKnown RBP8.67□□□□□ -1.02
CD44-237ENST00000534082 ALDH1A1P00352 501 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 TTLL12Q14166 644 aaPredicted RBP8.67□□□□□ -1.02
CD44-237ENST00000534082 WASHC4Q2M389 1173 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 TTLL7Q6ZT98 887 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 CD99L2Q8TCZ2 262 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 ERO1AQ96HE7 468 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 ZNF333Q96JL9 665 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 ZBTB3Q9H5J0 574 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 ZSWIM6Q9HCJ5 1215 aa8.67□□□□□ -1.02
CD44-237ENST00000534082 SPTBN5Q9NRC6 3674 aaKnown RBP8.67□□□□□ -1.02
CD44-237ENST00000534082 GRAPQ13588 217 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 SCARF1Q14162 830 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 VARS2Q5ST30 1063 aaKnown RBP8.66□□□□□ -1.02
CD44-237ENST00000534082 PPP1R42Q7Z4L9 355 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 ZNF34Q8IZ26 560 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 GRAPLQ8TC17 118 aaPredicted RBP8.66□□□□□ -1.02
CD44-237ENST00000534082 KHSRPQ92945 711 aaKnown RBP eCLIP8.66□□□□□ -1.02
CD44-237ENST00000534082 PRO3102Q9H379 93 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 EFCC1Q9HA90 598 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 KCNQ5Q9NR82 932 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 SCAF8Q9UPN6 1271 aaKnown RBP8.66□□□□□ -1.02
CD44-237ENST00000534082 LAMB2P55268 1798 aa8.66□□□□□ -1.02
CD44-237ENST00000534082 ZNF280AP59817 542 aaPredicted RBP8.65□□□□□ -1.02
CD44-237ENST00000534082 TCIRG1Q13488 830 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 SLC4A8Q2Y0W8 1093 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 PARP10Q53GL7 1025 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 SLC10A5Q5PT55 438 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 PRAMEF18Q5VWM3 479 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 GPR153Q6NV75 609 aa8.65□□□□□ -1.02
CD44-237ENST00000534082 DDX46Q7L014 1031 aaKnown RBP8.65□□□□□ -1.02
CD44-237ENST00000534082 COL3A1P02461 1466 aaPredicted RBP8.64□□□□□ -1.03
CD44-237ENST00000534082 ANKRD36CQ5JPF3 1778 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 KDM3BQ7LBC6 1761 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 SOX1O00570 391 aaPredicted RBP8.64□□□□□ -1.03
CD44-237ENST00000534082 VIL1P09327 827 aaKnown RBP8.64□□□□□ -1.03
CD44-237ENST00000534082 SLC9C1Q4G0N8 1177 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 SPRYD7Q5W111 196 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 TMC4Q7Z404 712 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 LRCH3Q96II8 777 aa8.64□□□□□ -1.03
CD44-237ENST00000534082 UTP14AQ9BVJ6 771 aaKnown RBP8.64□□□□□ -1.03
CD44-237ENST00000534082 COL25A1Q9BXS0 654 aaPredicted RBP8.64□□□□□ -1.03
CD44-237ENST00000534082 SCN9AQ15858 1988 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 MANSC4A6NHS7 340 aaPredicted RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 C6orf229H3BNL8 230 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 IGF2BP3O00425 579 aaKnown RBP eCLIP8.63□□□□□ -1.03
CD44-237ENST00000534082 U2SURPO15042 1029 aaKnown RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 MYCP01106 439 aaPredicted RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 MYL6BP14649 208 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 NF2P35240 595 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 CAP1Q01518 475 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 PTPN12Q05209 780 aaKnown RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 GIGYF2Q6Y7W6 1299 aaKnown RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 DPF3Q92784 378 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 MYOZ2Q9NPC6 264 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 NSFL1CQ9UNZ2 370 aaKnown RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 RRP7AQ9Y3A4 280 aaKnown RBP8.63□□□□□ -1.03
CD44-237ENST00000534082 KNSTRNQ9Y448 316 aa8.63□□□□□ -1.03
CD44-237ENST00000534082 A0A1W2PPC1 479 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 HCLS1P14317 486 aaPredicted RBP8.62□□□□□ -1.03
CD44-237ENST00000534082 CRHR2Q13324 411 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 PRKG1Q13976 671 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 RSBN1LQ6PCB5 846 aaPredicted RBP8.62□□□□□ -1.03
CD44-237ENST00000534082 MCM10Q7L590 875 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 ARMC9Q7Z3E5 817 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 NBPF11Q86T75 865 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 SPNS2Q8IVW8 549 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 AGBL3Q8NEM8 1001 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 EYA3Q99504 573 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 KRTAP3-3Q9BYR6 98 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 KRTAP3-2Q9BYR7 98 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 RYDENQ9NUL5 291 aaKnown RBP8.62□□□□□ -1.03
CD44-237ENST00000534082 POLLQ9UGP5 575 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 PTCH2Q9Y6C5 1203 aa8.62□□□□□ -1.03
CD44-237ENST00000534082 USP17L8P0C7I0 530 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 INHBEP58166 350 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 GPSM2P81274 684 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 SP3Q02447 781 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
CD44-237ENST00000534082 RTF1Q92541 710 aaKnown RBP8.61□□□□□ -1.03
CD44-237ENST00000534082 NECTIN2Q92692 538 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 PHACTR3Q96KR7 559 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 TAF1P21675 1872 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 LAMB1P07942 1786 aa8.61□□□□□ -1.03
CD44-237ENST00000534082 COL4A1P02462 1669 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 WTIPA6NIX2 430 aaPredicted RBP8.6□□□□□ -1.03
CD44-237ENST00000534082 NUDT7P0C024 238 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 ZBTB48P10074 688 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms