RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PI16Q6UXB8 463 aa24.83■■□□□ 1.57
VPS28-209ENST00000528142 UBR3Q6ZT12 1888 aa24.83■■□□□ 1.56
VPS28-209ENST00000528142 C4AP0C0L4 1744 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 CPA1P15085 419 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 ARID4AP29374 1257 aaPredicted RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 AK2P54819 239 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 INTS4Q96HW7 963 aaKnown RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 CDC5LQ99459 802 aaKnown RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 U3KPZ7 1027 aaPredicted RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 PHKA1P46020 1223 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 LRRFIP1Q32MZ4 808 aaKnown RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 TRAPPC3LQ5T215 181 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 VPS53Q5VIR6 699 aa24.82■■□□□ 1.56
VPS28-209ENST00000528142 NOL8Q76FK4 1167 aaKnown RBP24.82■■□□□ 1.56
VPS28-209ENST00000528142 ZFYP08048 801 aaPredicted RBP24.81■■□□□ 1.56
VPS28-209ENST00000528142 SLC5A1P13866 664 aa24.81■■□□□ 1.56
VPS28-209ENST00000528142 RUFY3Q7L099 469 aa24.81■■□□□ 1.56
VPS28-209ENST00000528142 CYP46A1Q9Y6A2 500 aa24.81■■□□□ 1.56
VPS28-209ENST00000528142 TAF6LQ9Y6J9 622 aa24.81■■□□□ 1.56
VPS28-209ENST00000528142 MAST3O60307 1309 aa24.81■■□□□ 1.56
VPS28-209ENST00000528142 COL4A1P02462 1669 aa24.8■■□□□ 1.56
VPS28-209ENST00000528142 COL24A1Q17RW2 1714 aa24.8■■□□□ 1.56
VPS28-209ENST00000528142 CYP2E1P05181 493 aaPredicted RBP24.8■■□□□ 1.56
VPS28-209ENST00000528142 UQCRFS1P1P0C7P4 283 aa24.8■■□□□ 1.56
VPS28-209ENST00000528142 GTF2E1P29083 439 aaPredicted RBP24.8■■□□□ 1.56
VPS28-209ENST00000528142 PDRG1Q9NUG6 133 aa24.8■■□□□ 1.56
VPS28-209ENST00000528142 PSMA5P28066 241 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 RFC4P35249 363 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 NBPF5PQ86XG9 351 aaPredicted RBP24.79■■□□□ 1.56
VPS28-209ENST00000528142 DSCC1Q9BVC3 393 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 SNAP23O00161 211 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 NUCB2P80303 420 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 CHRNDQ07001 517 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 OSBP2Q969R2 916 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 LIMCH1Q9UPQ0 1083 aa24.79■■□□□ 1.56
VPS28-209ENST00000528142 ARAP2Q8WZ64 1704 aa24.78■■□□□ 1.56
VPS28-209ENST00000528142 PHF14O94880 888 aa24.78■■□□□ 1.56
VPS28-209ENST00000528142 ADRA2BP18089 450 aa24.78■■□□□ 1.56
VPS28-209ENST00000528142 TPTE2Q6XPS3 522 aa24.78■■□□□ 1.56
VPS28-209ENST00000528142 ANKRD18AQ8IVF6 992 aa24.78■■□□□ 1.56
VPS28-209ENST00000528142 M0R2C6 588 aa24.77■■□□□ 1.56
VPS28-209ENST00000528142 CLEC17AQ6ZS10 378 aa24.77■■□□□ 1.56
VPS28-209ENST00000528142 BSDC1Q9NW68 430 aaPredicted RBP24.77■■□□□ 1.56
VPS28-209ENST00000528142 COL9A3Q14050 684 aaPredicted RBP24.77■■□□□ 1.56
VPS28-209ENST00000528142 TTF1Q15361 905 aaPredicted RBP24.77■■□□□ 1.56
VPS28-209ENST00000528142 AKAP11Q9UKA4 1901 aa24.76■■□□□ 1.55
VPS28-209ENST00000528142 HSPD1P10809 573 aaKnown RBP24.76■■□□□ 1.55
VPS28-209ENST00000528142 ZNF827Q17R98 1081 aa24.76■■□□□ 1.55
VPS28-209ENST00000528142 CYP21A2P08686 494 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 KRT32Q14532 448 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 APPBP2Q92624 585 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 NLRP3Q96P20 1036 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 ALDH8A1Q9H2A2 487 aaPredicted RBP24.75■■□□□ 1.55
VPS28-209ENST00000528142 PIH1D3Q9NQM4 214 aaKnown RBP24.75■■□□□ 1.55
VPS28-209ENST00000528142 PKP1Q13835 747 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 RGPD3A6NKT7 1758 aaPredicted RBP24.75■■□□□ 1.55
VPS28-209ENST00000528142 RGPD4Q7Z3J3 1758 aa24.75■■□□□ 1.55
VPS28-209ENST00000528142 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.74■■□□□ 1.55
VPS28-209ENST00000528142 BLOC1S2Q6QNY1 142 aa24.74■■□□□ 1.55
VPS28-209ENST00000528142 CELF1Q92879 486 aaKnown RBP24.74■■□□□ 1.55
VPS28-209ENST00000528142 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.74■■□□□ 1.552e-7■■■■□ 23.7
VPS28-209ENST00000528142 RPS6KB1P23443 525 aa24.73■■□□□ 1.55
VPS28-209ENST00000528142 NFIXQ14938 502 aa24.73■■□□□ 1.55
VPS28-209ENST00000528142 GBP4Q96PP9 640 aa24.73■■□□□ 1.55
VPS28-209ENST00000528142 LARP6Q9BRS8 491 aaKnown RBP24.73■■□□□ 1.55
VPS28-209ENST00000528142 ZDHHC9Q9Y397 364 aa24.73■■□□□ 1.55
VPS28-209ENST00000528142 ADD2P35612 726 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 RASGRF1Q13972 1273 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 WASHC4Q2M389 1173 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 ZSCAN25Q6NSZ9 544 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 SPATA5Q8NB90 893 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 AKT1S1Q96B36 256 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 MINPP1Q9UNW1 487 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 ZSCAN31Q96LW9 406 aaPredicted RBP24.72■■□□□ 1.55
VPS28-209ENST00000528142 CAMKK2Q96RR4 588 aa24.72■■□□□ 1.55
VPS28-209ENST00000528142 PUS7LQ9H0K6 701 aaKnown RBP24.72■■□□□ 1.55
VPS28-209ENST00000528142 CARMIL3Q8ND23 1372 aa24.71■■□□□ 1.55
VPS28-209ENST00000528142 DDX11L8A8MPP1 907 aa24.71■■□□□ 1.55
VPS28-209ENST00000528142 FOXP2O15409 715 aa24.71■■□□□ 1.55
VPS28-209ENST00000528142 BCAMP50895 628 aa24.71■■□□□ 1.55
VPS28-209ENST00000528142 EN1Q05925 392 aaPredicted RBP24.71■■□□□ 1.55
VPS28-209ENST00000528142 LARGE1O95461 756 aa24.7■■□□□ 1.55
VPS28-209ENST00000528142 TM4SF1P30408 202 aa24.7■■□□□ 1.55
VPS28-209ENST00000528142 UBE3CQ15386 1083 aa24.7■■□□□ 1.55
VPS28-209ENST00000528142 EZH2Q15910 746 aaKnown RBP24.7■■□□□ 1.55
VPS28-209ENST00000528142 CCDC24Q8N4L8 307 aa24.7■■□□□ 1.55
VPS28-209ENST00000528142 NEK1Q96PY6 1258 aa24.7■■□□□ 1.55
VPS28-209ENST00000528142 RPS8P62241 208 aaKnown RBP24.7■■□□□ 1.54
VPS28-209ENST00000528142 UBE4AQ14139 1066 aa24.7■■□□□ 1.54
VPS28-209ENST00000528142 SLC9C2Q5TAH2 1124 aa24.7■■□□□ 1.54
VPS28-209ENST00000528142 SH2B1Q9NRF2 756 aaPredicted RBP24.7■■□□□ 1.54
VPS28-209ENST00000528142 STOX1Q6ZVD7 989 aa24.69■■□□□ 1.54
VPS28-209ENST00000528142 TPCN1Q9ULQ1 816 aa24.68■■□□□ 1.54
VPS28-209ENST00000528142 CASZ1Q86V15 1759 aa24.68■■□□□ 1.54
VPS28-209ENST00000528142 ZNF804BA4D1E1 1349 aa24.68■■□□□ 1.54
VPS28-209ENST00000528142 TCRBV5S4A2TA0A5A2 114 aa24.68■■□□□ 1.54
VPS28-209ENST00000528142 IDH1O75874 414 aaKnown RBP24.68■■□□□ 1.54
VPS28-209ENST00000528142 GYS1P13807 737 aa24.68■■□□□ 1.54
VPS28-209ENST00000528142 TOB2Q14106 344 aaPredicted RBP24.68■■□□□ 1.54
VPS28-209ENST00000528142 ANKRD1Q15327 319 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms