RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ERVH48-1M5A8F1 160 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 ADH1AP07327 375 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 CTCFP49711 727 aaPredicted RBP6.66□□□□□ -1.34
CD44-218ENST00000525469 WASHC4Q2M389 1173 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 DOT1LQ8TEK3 1739 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 SBF1O95248 1867 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 KCPQ6ZWJ8 1503 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 ARFGEF1Q9Y6D6 1849 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 SPINT1O43278 529 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 CBLBQ13191 982 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 IRF7Q92985 503 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 ABHD8Q96I13 439 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 TBC1D2BQ9UPU7 963 aa6.65□□□□□ -1.34
CD44-218ENST00000525469 KIAA1210Q9ULL0 1709 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 CCDC85CA6NKD9 419 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 FOXN1O15353 648 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 TGFB2P61812 414 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 RELBQ01201 579 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 NFX1Q12986 1120 aaKnown RBP6.64□□□□□ -1.35
CD44-218ENST00000525469 FLIIQ13045 1269 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 MCM6Q14566 821 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 DCAF11Q8TEB1 546 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 POLMQ9NP87 494 aaPredicted RBP6.64□□□□□ -1.35
CD44-218ENST00000525469 TMPRSS4Q9NRS4 437 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 CABP1Q9NZU7 370 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 RNF181Q9P0P0 153 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 ANKRD36BQ8N2N9 1353 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 C10orf71Q711Q0 1435 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 NSD3Q9BZ95 1437 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 USP54Q70EL1 1684 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 LTN1O94822 1766 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 KIF13BQ9NQT8 1826 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 CCDC88AQ3V6T2 1871 aa6.64□□□□□ -1.35
CD44-218ENST00000525469 A0A0G2JLW4 131 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 RAD21O60216 631 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 VEGFAP15692 232 aaPredicted RBP6.63□□□□□ -1.35
CD44-218ENST00000525469 SOX11P35716 441 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 CC2D2BQ6DHV5 1058 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 UBR3Q6ZT12 1888 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 CYP2U1Q7Z449 544 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 CYLDQ9NQC7 956 aa6.63□□□□□ -1.35
CD44-218ENST00000525469 MKRN1Q9UHC7 482 aaKnown RBP6.63□□□□□ -1.35
CD44-218ENST00000525469 PDE4DIPQ5VU43 2346 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 ATP5J2-PTCD1G3V325 749 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 GPR37L1O60883 481 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 MYCP01106 439 aaPredicted RBP6.62□□□□□ -1.35
CD44-218ENST00000525469 ABL2P42684 1182 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 PTGIRP43119 386 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 ANKRD24Q8TF21 1146 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 PCDHB11Q9Y5F2 797 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 BRCA1P38398 1863 aaKnown RBP6.62□□□□□ -1.35
CD44-218ENST00000525469 C4BP0C0L5 1744 aa6.62□□□□□ -1.35
CD44-218ENST00000525469 PXDNLA1KZ92 1463 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 TTC21AQ8NDW8 1320 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 H3BM21 787 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 LILRA1O75019 489 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 LBX1P52954 281 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 ERVK-9P63128 1117 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 INSM1Q01101 510 aaPredicted RBP6.61□□□□□ -1.35
CD44-218ENST00000525469 SLFNL1Q499Z3 407 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 AGBL1Q96MI9 1066 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 GDPD2Q9HCC8 539 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 DNMT3LQ9UJW3 386 aa6.61□□□□□ -1.35
CD44-218ENST00000525469 TTC21BQ7Z4L5 1316 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 MMP10P09238 476 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 DPEP1P16444 411 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 SSFA2P28290 1259 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 RGS19P49795 217 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 ZCRB1Q8TBF4 217 aaKnown RBP6.6□□□□□ -1.35
CD44-218ENST00000525469 INSM2Q96T92 566 aaPredicted RBP6.6□□□□□ -1.35
CD44-218ENST00000525469 CCDC87Q9NVE4 849 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 PIM2Q9P1W9 311 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 NOP58Q9Y2X3 529 aaKnown RBP6.6□□□□□ -1.35
CD44-218ENST00000525469 FAM208AQ9UK61 1670 aaKnown RBP6.6□□□□□ -1.35
CD44-218ENST00000525469 NFAT5O94916 1531 aa6.6□□□□□ -1.35
CD44-218ENST00000525469 NSD2O96028 1365 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 SOBPA7XYQ1 873 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 WIPF1O43516 503 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 GPC1P35052 558 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 SEMA3FQ13275 785 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 DALRD3Q5D0E6 543 aaKnown RBP6.59□□□□□ -1.35
CD44-218ENST00000525469 SMIM5Q71RC9 77 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 SMARCC1Q92922 1105 aaPredicted RBP6.59□□□□□ -1.35
CD44-218ENST00000525469 LTV1Q96GA3 475 aaPredicted RBP6.59□□□□□ -1.35
CD44-218ENST00000525469 NLRP3Q96P20 1036 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 ZNF395Q9H8N7 513 aaPredicted RBP6.59□□□□□ -1.35
CD44-218ENST00000525469 CEP126Q9P2H0 1117 aa6.59□□□□□ -1.35
CD44-218ENST00000525469 KIAA1551Q9HCM1 1747 aa6.59□□□□□ -1.36
CD44-218ENST00000525469 PALLDQ8WX93 1383 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 CENPJQ9HC77 1338 aaPredicted RBP6.58□□□□□ -1.36
CD44-218ENST00000525469 ITGB4P16144 1822 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 VIRMAQ69YN4 1812 aaKnown RBP6.58□□□□□ -1.36
CD44-218ENST00000525469 GLTPD2A6NH11 291 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 ANP32AP39687 249 aaKnown RBP6.58□□□□□ -1.36
CD44-218ENST00000525469 TMF1P82094 1093 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 IRF5Q13568 498 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 LCE2AQ5TA79 106 aaPredicted RBP6.58□□□□□ -1.36
CD44-218ENST00000525469 MPRIPQ6WCQ1 1025 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 RNF135Q8IUD6 432 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 NLGN1Q8N2Q7 840 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms